Rad51c (RAD51 paralog C) - Rat Genome Database

Name: Rad51c
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rad51c (RAD51 paralog C) Ictidomys tridecemlineatus

Analyze

Symbol:

Rad51c

Name:

RAD51 paralog C

RGD ID:

12677186

Description:

ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN female meiosis sister chromatid cohesion (ortholog); male meiosis I (ortholog); reciprocal meiotic recombination (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN cell junction (inferred); cytoplasm (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DNA repair protein RAD51 homolog 3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAD51C (RAD51 paralog C)	NCBI	Ortholog
Mus musculus (house mouse):	Rad51c (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rad51c (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rad51c (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAD51C (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAD51C (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAD51C (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAD51C (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rad51c (RAD51 paralog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	4,439,097 - 4,473,357 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	4,440,638 - 4,473,301 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

Breast Cancer, Familial (ISO)

breast carcinoma (ISO)

Breast Neoplasms (ISO)

colon carcinoma (ISO)

endometrial carcinoma (ISO)

familiar ovarian carcinoma (ISO)

Fanconi anemia (ISO)

Fanconi anemia complementation group O (ISO)

genetic disease (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Hereditary Neoplastic Syndromes (ISO)

Joubert syndrome 1 (ISO)

microcephaly (ISO)

ovarian cancer (ISO)

Ovarian Neoplasms (ISO)

primary ovarian insufficiency (ISO)

stomach cancer (ISO)

uterine corpus cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA recombination (IEA)

DNA repair (IEA)

double-strand break repair via homologous recombination (IEA)

female meiosis sister chromatid cohesion (IEA,ISO)

male meiosis I (IEA,ISO)

meiotic DNA recombinase assembly (IEA)

positive regulation of G2/M transition of mitotic cell cycle (IEA)

reciprocal meiotic recombination (IEA,ISO)

spermatogenesis (IEA,ISO)

telomere maintenance via recombination (IEA)

Cellular Component

cell junction (IEA)

cytoplasm (IEA)

cytosol (IEA)

Holliday junction resolvase complex (IEA)

intracellular membrane-bounded organelle (IEA)

mitochondrion (IEA)

nucleoplasm (IEA)

nucleus (IEA)

perinuclear region of cytoplasm (IEA)

Rad51B-Rad51C-Rad51D-XRCC2 complex (IEA)

Rad51C-XRCC3 complex (IEA)

replication fork (IEA)

Molecular Function

ATP binding (IEA)

ATP-dependent DNA damage sensor activity (IEA)

crossover junction DNA endonuclease activity (IEA,ISO)

DNA binding (IEA)

four-way junction DNA binding (IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

homologous recombination pathway of double-strand break repair (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rad51c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	4,439,097 - 4,473,357 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	4,440,638 - 4,473,301 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAD51C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	58,692,573 - 58,735,611 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	58,692,573 - 58,735,611 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	56,769,934 - 56,812,972 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	54,124,962 - 54,166,691 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	54,124,961 - 54,166,685	NCBI
Celera	17	53,231,717 - 53,273,527 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	52,130,436 - 52,172,218 (+)	NCBI		HuRef
CHM1_1	17	56,835,470 - 56,877,217 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	59,560,405 - 59,603,693 (+)	NCBI		T2T-CHM13v2.0

Rad51c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,267,471 - 87,295,780 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	87,267,471 - 87,295,780 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	87,376,645 - 87,404,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	87,376,645 - 87,404,954 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	87,191,109 - 87,217,997 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	87,192,840 - 87,220,634 (-)	NCBI		MGSCv36	mm8
Celera	11	96,979,493 - 97,006,381 (-)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.08	NCBI

Rad51c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	72,702,299 - 72,728,980 (-)	NCBI		GRCr8
mRatBN7.2	10	72,205,032 - 72,231,643 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,205,032 - 72,231,248 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	76,815,543 - 76,841,717 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	76,320,458 - 76,346,632 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	71,784,976 - 71,811,148 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	74,697,713 - 74,724,004 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	74,697,716 - 74,724,472 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	75,376,876 - 75,403,188 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	75,692,205 - 75,718,369 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	71,121,557 - 71,147,722 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Rad51c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	4,145,226 - 4,178,487 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	4,053,195 - 4,178,226 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAD51C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,865,211 - 74,905,901 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	79,676,584 - 79,717,351 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	52,769,446 - 52,808,467 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	57,621,552 - 57,658,920 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	57,621,552 - 57,660,701 (+)	Ensembl	panpan1.1		panPan2

RAD51C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	33,289,675 - 33,347,411 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	33,289,742 - 33,326,405 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	32,524,483 - 32,581,843 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	34,095,493 - 34,153,075 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	34,095,486 - 34,132,470 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,882,005 - 32,939,352 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	33,171,057 - 33,228,397 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	33,257,474 - 33,314,872 (+)	NCBI		UU_Cfam_GSD_1.0

RAD51C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,975,957 - 35,019,016 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,975,949 - 35,018,112 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	35,750,071 - 35,786,767 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAD51C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	34,666,934 - 34,708,479 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	34,666,162 - 34,708,457 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	5,470,623 - 5,519,489 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rad51c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624871	708,048 - 746,753 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002898 ⟹ ENSSTOP00000002592

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	4,439,097 - 4,473,357 (-)	Ensembl

RefSeq Acc Id:

XM_005321570 ⟹ XP_005321627

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI
SpeTri2.0	NW_004936490	4,440,638 - 4,473,236 (-)	NCBI

Sequence:

show sequence

CAGAGACGTTCCGCTTTGAAATGCAGCGGGATTTGGTGAGTTTCCCGCTGTCTCCTGCAGTACG
GGTGAAGCTGGTGTCTGCAGGTTTCCAGAATGCTGAGGAACTCCTGGAGGTGAAACCCTCCGAA
CTCAGCAAAGAAGTTGGAATATCTAAAGAGGAGGCTTTAGAAACTCTGCAGATTATAAGAAGAG
AGTGTCTCACAAATAAACCAAAATATGCTGGTGCGCCAGAGTCAGGCAGGAAGTGTACAGCACT
GGAACTTCTCGAGCAGGAGCAAACCCAGGGCTTCATTATTACCTTCTGTTCTGCACTAGATAAT
ATTCTTGGCGGTGGAGTACCCTTAATGAAAACAACGGAAATTTGTGGTGCACCAGGTGTTGGAA
AAACACAATTATGTATGCAGTTGGCAATTGATGTGCAGATACCAGAATGTTTTGGAGGAGTGGC
AGGTGAAGCAGTTTTTATTGATACAGAGGGAAGCTTTATGGTTGACAGAGTGGTAGACCTTGCT
ACTGCCTGCATTCAGCATCTTCATCTTATAGCAGGAACACACATGGAAGAAGAACACCAAAGAG
CTTTGAAGGACTTCACTCTTGAAAATATTCTTTCCCATATTTACTATTTTCGTTGTCATGATTA
TACAGAACTACTGGCGCAAGTTTATCTTCTTCCAGATTTCCTTTCAGGTCATTCAAAGGTTCGA
TTAGTGATAGTAGATGGCATTGCTTTTCCTTTTCGCCATGACATTGATGACCTATCCCTTCGAA
CTCGATTACTAAATGGCCTTGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGT
AATTTTAACCAATCAAATGACAACAAAGATTGATAAAAATCAGGCCTTGCTGGTTCCTGCATTA
GGGGAGAGTTGGGGACATGCTGCTACAATACGGCTAATTTTTCAGTGGGACAGAATGCAAAGGT
TGGCAACATTGTACAAATCACCAAGCCAAAAGGAATCCAGAGTACTGTTTCAGATCACACCTCA
GGGATTTAGAGATGCTGTTGCCACAGAAGGTTCATCGAGTACCCGGAAAAGGTCACGAGAACCA
GAGGAAGAACAGTAACCCAAAAACAAATCTACAATATACAAATATATTGATGTGAAATTCATTG
TAGTATACTCATTACTTTAAAGTATAAACACAATAGCATGAATAAATCAGGATTATATGAAGTA
AATGGGAAAAGTATTTAAGGAATGTGATTCTCTGAAAAATGTTTTCTAAAGCAGTGTTCTACAA
TTACATTTTGCTTTGGTTTCATTTTCAGTAGCATTCAGTAAGAGGTAACTTACATAGGTATTAC
ATTTTCCAACTATGGAAAGCTACTCGCATGTGGCCGATCTGAATTTACTGTTCAGACTAGTATA
TTTTTTTTCCCAATTGCTTAGAAAAATCATAGGAATAAAGGAT

hide sequence

RefSeq Acc Id:

XM_005321571 ⟹ XP_005321628

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI
SpeTri2.0	NW_004936490	4,440,638 - 4,473,301 (-)	NCBI

Sequence:

show sequence

CGCGGGAGTGCGGAGTTTTGGTCTCCCGGACTTAGCTACAGGGGTGGGGTCTGCGCTGTAGTGT
ACAGAGACGTTCCGCTTTGAAATGCAGCGGGATTTGGTGAGTTTCCCGCTGTCTCCTGCAGTAC
GGGTGAAGCTGGTGTCTGCAGGTTTCCAGAATGCTGAGGAACTCCTGGAGGTGAAACCCTCCGA
ACTCAGCAAAGAAGTTGGAATATCTAAAGAGGAGGCTTTAGAAACTCTGCAGATTATAAGAAGA
GAGTGTCTCACAAATAAACCAAAATATGCTGGTGCGCCAGAGTCAGGCAGGAAGTGTACAGCAC
TGGAACTTCTCGAGCAGGAGCAAACCCAGGGCTTCATTATTACCTTCTGTTCTGCACTAGATAA
TATTCTTGGCGGTGGAGTACCCTTAATGAAAACAACGGAAATTTGTGGTGCACCAGGTGTTGGA
AAAACACAATTATGTATGCAGTTGGCAATTGATGTGCAGATACCAGAATGTTTTGGAGGAGTGG
CAGGTGAAGCAGTTTTTATTGATACAGAGGGAAGCTTTATGGTTGACAGAGTGGTAGACCTTGC
TACTGCCTGCATTCAGCATCTTCATCTTATAGCAGGAACACACATGGAAGAAGAACACCAAAGA
GCTTTGAAGGACTTCACTCTTGAAAATATTCTTTCCCATATTTACTATTTTCGTTGTCATGATT
ATACAGAACTACTGGCGCAAGTTTATCTTCTTCCAGATTTCCTTTCAGGTCATTCAAAGGTTCG
ATTAGTGATAGTAGATGGCATTGCTTTTCCTTTTCGCCATGACATTGATGACCTATCCCTTCGA
ACTCGATTACTAAATGGCCTTGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTG
TAATTTTAACCAATCAAATGACAACAAAGATTGATAAAAATCAGGCCTTGCTGGTTCCTGCATT
AGGGGAGAGTTGGGGACATGCTGCTACAATACGGCTAATTTTTCAGTGGGACAGAATGCAAAGC
AGGTTGGCAACATTGTACAAATCACCAAGCCAAAAGGAATCCAGAGTACTGTTTCAGATCACAC
CTCAGGGATTTAGAGATGCTGTTGCCACAGAAGGTTCATCGAGTACCCGGAAAAGGTCACGAGA
ACCAGAGGAAGAACAGTAACCCAAAAACAAATCTACAATATACAAATATATTGATGTGAAATTC
ATTGTAGTATACTCATTACTTTAAAGTATAAACACAATAGCATGAATAAATCAGGATTATATGA
AGTAAATGGGAAAAGTATTTAAGGAATGTGATTCTCTGAAAAATGTTTTCTAAAGCAGTGTTCT
ACAATTACATTTTGCTTTGGTTTCATTTTCAGTAGCATTCAGTAAGAGGTAACTTACATAGGTA
TTACATTTTCCAACTATGGAAAGCTACTCGCATGTGGCCGATCTGAATTTACTGTTCAGACTAG
TATATTTTTTTTCCCAATTGCTTAGAAAAATCATAGGAATAAAGGAT

hide sequence

RefSeq Acc Id:

XM_013356996 ⟹ XP_013212450

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI
SpeTri2.0	NW_004936490	4,440,638 - 4,473,301 (-)	NCBI

Sequence:

show sequence

CGCGGGAGTGCGGAGTTTTGGTCTCCCGGACTTAGCTACAGGGGTGGGGTCTGCGCTGTAGTGT
ACAGAGACGTTCCGCTTTGAAATGCAGCGGGATTTGGTGAGTTTCCCGCTGTCTCCTGCAGTAC
GGGTGAAGCTGGTGTCTGCAGGTTTCCAGAATGCTGAGGAACTCCTGGAGGTGAAACCCTCCGA
ACTCAGCAAAGATAATATTCTTGGCGGTGGAGTACCCTTAATGAAAACAACGGAAATTTGTGGT
GCACCAGGTGTTGGAAAAACACAATTATGTATGCAGTTGGCAATTGATGTGCAGATACCAGAAT
GTTTTGGAGGAGTGGCAGGTGAAGCAGTTTTTATTGATACAGAGGGAAGCTTTATGGTTGACAG
AGTGGTAGACCTTGCTACTGCCTGCATTCAGCATCTTCATCTTATAGCAGGAACACACATGGAA
GAAGAACACCAAAGAGCTTTGAAGGACTTCACTCTTGAAAATATTCTTTCCCATATTTACTATT
TTCGTTGTCATGATTATACAGAACTACTGGCGCAAGTTTATCTTCTTCCAGATTTCCTTTCAGG
TCATTCAAAGGTTCGATTAGTGATAGTAGATGGCATTGCTTTTCCTTTTCGCCATGACATTGAT
GACCTATCCCTTCGAACTCGATTACTAAATGGCCTTGCCCAGCAAATGATCAGCCTTGCAAATA
ATCACAGATTAGCTGTAATTTTAACCAATCAAATGACAACAAAGATTGATAAAAATCAGGCCTT
GCTGGTTCCTGCATTAGGGGAGAGTTGGGGACATGCTGCTACAATACGGCTAATTTTTCAGTGG
GACAGAATGCAAAGCAGGTTGGCAACATTGTACAAATCACCAAGCCAAAAGGAATCCAGAGTAC
TGTTTCAGATCACACCTCAGGGATTTAGAGATGCTGTTGCCACAGAAGGTTCATCGAGTACCCG
GAAAAGGTCACGAGAACCAGAGGAAGAACAGTAACCCAAAAACAAATCTACAATATACAAATAT
ATTGATGTGAAATTCATTGTAGTATACTCATTACTTTAAAGTATAAACACAATAGCATGAATAA
ATCAGGATTATATGAAGTAAATGGGAAAAGTATTTAAGGAATGTGATTCTCTGAAAAATGTTTT
CTAAAGCAGTGTTCTACAATTACATTTTGCTTTGGTTTCATTTTCAGTAGCATTCAGTAAGAGG
TAACTTACATAGGTATTACATTTTCCAACTATGGAAAGCTACTCGCATGTGGCCGATCTGAATT
TACTGTTCAGACTAGTATATTTTTTTTCCCAATTGCTTAGAAAAATCATAGGAATAAAGGAT

hide sequence

RefSeq Acc Id:

XM_021724075 ⟹ XP_021579750

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,741 - 32,634,425 (+)	NCBI
SpeTri2.0	NW_004936490	4,440,638 - 4,473,301 (-)	NCBI

Sequence:

show sequence

CGCGGGAGTGCGGAGTTTTGGTCTCCCGGACTTAGCTACAGGGGTGGGGTCTGCGCTGTAGTGT
ACAGAGACGTTCCGCTTTGAAATGCAGCGGGATTTGGTGAGTTTCCCGCTGTCTCCTGCAGTAC
GGGTGAAGCTGGTGTCTGCAGGTTTCCAGAATGCTGAGGAACTCCTGGAGGTGAAACCCTCCGA
ACTCAGCAAAGAAGTTGGAATATCTAAAGAGGAGGCTTTAGAAACTCTGCAGATTATAAGAAGA
GAGTGTCTCACAAATAAACCAAAATATGCTGGTGCGCCAGAGTCAGGCAGGAAGTGTACAGCAC
TGGAACTTCTCGAGCAGGAGCAAACCCAGGGCTTCATTATTACCTTCTGTTCTGCACTAGATAA
TATTCTTGGCGGTGGAGTACCCTTAATGAAAACAACGGAAATTTGTGGTGCACCAGGTGTTGGA
AAAACACAATTATGTATGCAGTTGGCAATTGATGTGCAGATACCAGAATGTTTTGGAGGAGTGG
CAGGTGAAGCAGTTTTTATTGATACAGAGGGAAGCTTTATGGTTGACAGAGTGGTAGACCTTGC
TACTGCCTGCATTCAGCATCTTCATCTTATAGCAGGAACACACATGGAAGAAGAACACCAAAGA
GCTTTGAAGGACTTCACTCTTGAAAATATTCTTTCCCATATTTACTATTTTCGTTGTCATGATT
ATACAGAACTACTGGCGCAAGTTTATCTTCTTCCAGATTTCCTTTCAGGTCATTCAAAGGTTCG
ATTAGTGATAGTAGATGGCATTGCTTTTCCTTTTCGCCATGACATTGATGACCTATCCCTTCGA
ACTCGATTACTAAATGGCCTTGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTG
TAATTTTAACCAATCAAATGACAACAAAGATTGATAAAAATCAGGCCTTGCTGGTTCCTGCATT
AGGGGAGAGTTGGGGACATGCTGCTACAATACGGCTAATTTTTCAGTGGGACAGAATGCAAAGC
CTCAGGGATTTAGAGATGCTGTTGCCACAGAAGGTTCATCGAGTACCCGGAAAAGGTCACGAGA
ACCAGAGGAAGAACAGTAACCCAAAAACAAATCTACAATATACAAATATATTGATGTGAAATTC
ATTGTAGTATACTCATTACTTTAAAGTATAAACACAATAGCATGAATAAATCAGGATTATATGA
AGTAAATGGGAAAAGTATTTAAGGAATGTGATTCTCTGAAAAATGTTTTCTAAAGCAGTGTTCT
ACAATTACATTTTGCTTTGGTTTCATTTTCAGTAGCATTCAGTAAGAGGTAACTTACATAGGTA
TTACATTTTCCAACTATGGAAAGCTACTCGCATGTGGCCGATCTGAATTTACTGTTCAGACTAG
TATATTTTTTTTCCCAATTGCTTAGAAAAATCATAGGAATAAAGGAT

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RefSeq Acc Id:

XM_021724077 ⟹ XP_021579752

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,816 - 32,603,497 (+)	NCBI
SpeTri2.0	NW_004936490	4,471,606 - 4,473,236 (-)	NCBI

Sequence:

show sequence

CAGAGACGTTCCGCTTTGAAATGCAGCGGGATTTGGTGAGTTTCCCGCTGTCTCCTGCAGTACG
GGTGAAGCTGGTGTCTGCAGGTTTCCAGAATGCTGAGGAACTCCTGGAGGTGAAACCCTCCGAA
CTCAGCAAAGAAGTTGGAATATCTAAAGAGGAGGCTTTAGAAACTCTGCAGATTATAAGAAGAG
AGTGTCTCACAAATAAACCAAAATATGCTGGTGCGCCAGAGTCAGGCAGGAAGTGTACAGCACT
GGAACTTCTCGAGCAGGAGCAAACCCAGGGCTTCATTATTACCTTCTGTTCTGCACTAGATAAT
ATTCTTGGCGGTGGAGTACCCTTAATGAAAACAACGGAAATTTGTGGTGCACCAGGTGTTGGAA
AAACACAATTATGGTAAATATGCAGTTGGCAATTGATGTGCAGATACCAGAATGTTTTGGAGGA
GTGGCAGGTGAAGCAGTTTTTATTGATACAGAGGGAAG

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RefSeq Acc Id:

XR_005726393

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,601,741 - 32,632,754 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005321627	(Get FASTA)	NCBI Sequence Viewer
	XP_005321628	(Get FASTA)	NCBI Sequence Viewer
	XP_013212450	(Get FASTA)	NCBI Sequence Viewer
	XP_021579750	(Get FASTA)	NCBI Sequence Viewer
	XP_021579752	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002592.3

RefSeq Acc Id:	XP_005321627 ⟸ XM_005321570
- Peptide Label:	isoform X2
- UniProtKB:	I3M1B6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRDLVSFPLSPAVRVKLVSAGFQNAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKP KYAGAPESGRKCTALELLEQEQTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCMQ LAIDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQRALKDFTL ENILSHIYYFRCHDYTELLAQVYLLPDFLSGHSKVRLVIVDGIAFPFRHDIDDLSLRTRLLNGL AQQMISLANNHRLAVILTNQMTTKIDKNQALLVPALGESWGHAATIRLIFQWDRMQRLATLYKS PSQKESRVLFQITPQGFRDAVATEGSSSTRKRSREPEEEQ hide sequence

RefSeq Acc Id:

XP_013212450 ⟸ XM_013356996

- Peptide Label:

isoform X4

- Sequence:

show sequence

MQRDLVSFPLSPAVRVKLVSAGFQNAEELLEVKPSELSKDNILGGGVPLMKTTEICGAPGVGKT
QLCMQLAIDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQRAL
KDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSGHSKVRLVIVDGIAFPFRHDIDDLSLRTR
LLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALLVPALGESWGHAATIRLIFQWDRMQSRL
ATLYKSPSQKESRVLFQITPQGFRDAVATEGSSSTRKRSREPEEEQ

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RefSeq Acc Id:

XP_005321628 ⟸ XM_005321571

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRDLVSFPLSPAVRVKLVSAGFQNAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKP
KYAGAPESGRKCTALELLEQEQTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCMQ
LAIDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQRALKDFTL
ENILSHIYYFRCHDYTELLAQVYLLPDFLSGHSKVRLVIVDGIAFPFRHDIDDLSLRTRLLNGL
AQQMISLANNHRLAVILTNQMTTKIDKNQALLVPALGESWGHAATIRLIFQWDRMQSRLATLYK
SPSQKESRVLFQITPQGFRDAVATEGSSSTRKRSREPEEEQ

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RefSeq Acc Id:

XP_021579750 ⟸ XM_021724075

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQRDLVSFPLSPAVRVKLVSAGFQNAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKP
KYAGAPESGRKCTALELLEQEQTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCMQ
LAIDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQRALKDFTL
ENILSHIYYFRCHDYTELLAQVYLLPDFLSGHSKVRLVIVDGIAFPFRHDIDDLSLRTRLLNGL
AQQMISLANNHRLAVILTNQMTTKIDKNQALLVPALGESWGHAATIRLIFQWDRMQSLRDLEML
LPQKVHRVPGKGHENQRKNSNPKTNLQYTNILM

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RefSeq Acc Id:	XP_021579752 ⟸ XM_021724077
- Peptide Label:	isoform X5
- Sequence:	show sequence MQRDLVSFPLSPAVRVKLVSAGFQNAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKP KYAGAPESGRKCTALELLEQEQTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLW hide sequence

RefSeq Acc Id:

ENSSTOP00000002592 ⟸ ENSSTOT00000002898

Protein Domains

RecA family profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002901	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002898.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DNA_recomb/repair_Rad51_C	UniProtKB/TrEMBL
	DNA_recomb/repair_RecA-like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RecA_ATP-bd	UniProtKB/TrEMBL
NCBI Gene	Rad51c	ENTREZGENE
PANTHER	DNA REPAIR PROTEIN RAD51 HOMOLOG 3	UniProtKB/TrEMBL
	DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C	UniProtKB/TrEMBL
Pfam	Rad51	UniProtKB/TrEMBL
PIRSF	Rad51	UniProtKB/TrEMBL
PROSITE	RECA_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3M1B6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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