S100a16 (S100 calcium binding protein A16)

Gene: S100a16 (S100 calcium binding protein A16) Ictidomys tridecemlineatus

Analyze

Symbol:

S100a16

Name:

S100 calcium binding protein A16

RGD ID:

12675818

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); identical protein binding (inferred); INVOLVED IN response to calcium ion (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,376,662 - 24,382,902 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,406,962 - 3,409,717 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,407,044 - 3,413,277 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

response to calcium ion (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

extracellular space (IEA)

nucleolus (IEA)

nucleus (IEA)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent protein binding (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

S100a16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,376,662 - 24,382,902 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,406,962 - 3,409,717 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,407,044 - 3,413,277 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

S100A16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,606,883 - 153,613,137 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,606,886 - 153,613,145 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,579,359 - 153,585,613 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,845,991 - 151,852,138 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	150,392,439 - 150,398,587	NCBI
Celera	1	126,650,891 - 126,657,038 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,942,655 - 124,948,802 (-)	NCBI		HuRef
CHM1_1	1	154,975,340 - 154,981,487 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,744,143 - 152,750,397 (-)	NCBI		T2T-CHM13v2.0

S100a16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,444,561 - 90,450,458 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,444,561 - 90,450,458 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,537,254 - 90,543,151 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,537,254 - 90,543,151 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,345,145 - 90,347,073 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,627,150 - 90,629,078 (+)	NCBI		MGSCv36	mm8
Celera	3	90,579,766 - 90,581,694 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.25	NCBI

S100a16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,313,986 - 178,319,696 (+)	NCBI		GRCr8
mRatBN7.2	2	176,016,405 - 176,022,117 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,016,268 - 176,022,117 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,156,468 - 183,162,244 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,178,731 - 181,184,511 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,778,980 - 175,784,750 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,923,140 - 189,928,850 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,922,996 - 189,928,848 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,356,226 - 209,361,935 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,807,564 - 182,813,276 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,759,870 - 182,763,374 (+)	NCBI
Celera	2	169,951,445 - 169,957,171 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

S100a16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	254,370 - 260,471 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	254,370 - 260,471 (-)	NCBI	ChiLan1.0	ChiLan1.0

S100A16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,221,000 - 96,227,120 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,959,841 - 95,962,311 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,961,978 - 128,968,230 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,590,360 - 132,596,532 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,590,360 - 132,592,827 (-)	Ensembl	panpan1.1		panPan2

S100A16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,447,422 - 43,452,625 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,447,494 - 43,452,130 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,940,396 - 42,945,609 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,397,110 - 43,402,323 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,397,192 - 43,401,828 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,099,412 - 43,104,625 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,153,079 - 43,158,311 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,436,925 - 43,442,138 (+)	NCBI		UU_Cfam_GSD_1.0

S100A16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	96,030,930 - 96,038,602 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,960,698 - 104,968,318 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

S100A16
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,192,117 - 10,198,257 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	9,569,260 - 9,575,464 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

S100a16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,532,292 - 3,538,640 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,532,876 - 3,538,530 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005331259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005331260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000000655 ⟹ ENSSTOP00000000590

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936580	3,406,962 - 3,409,717 (-)	Ensembl

RefSeq Acc Id:

XM_005331259 ⟹ XP_005331316

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	24,376,662 - 24,382,902 (-)	NCBI
SpeTri2.0	NW_004936580	3,407,044 - 3,413,277 (-)	NCBI

Sequence:

show sequence

GCCAGCTCAGCCAGGCAGGGCCGGGAGGGAGTGGGACAGATTCTGGGAGTGCAGCGGGGAGGAG
TCCTGGCCGGGCTGAACGGGGAGCTGTTGGCAGTGCCAGAGCCCAGGCCCCAGAACCCTGCAGG
AGTGGAGGTGGATCGAGCAGCAGGCCCCGGAGGAGCTGAAGCAGCGCAATGGCCGACTGCTACA
CGGACCTAGAGAAGGCGGTGGTGGTGCTGGTGGAGAACTTCTACAAATACGTGTCTAAGCACAG
CCTGGTCAAGAACAAGATCAGCAAGAGCAGCTTCCGCAAGATGCTTCAGAAGGAGCTCAACCAC
ATGCTGACGGACACGGGGAACCGAAAGGCCGCCGACAAGCTCATCCAGAACCTGGACGCCAACC
ACGACGGGCGCATCAGCTTTGACGAGTACTGGACCTTGATAGGTGGCATCACCGGCCCCATCGC
CAACCTGATCCGGCAGCAGGAGCAGCAGAGTAGCAGCTAAAGGCCCCGCCACCGCCCTCCAGGC
CCCCGGAGCCCAGCCCTGTTCTCTGCCCAGGCTCCCTCCTTGACCCCGCTGCCCTCCCAGCCCC
TCCTGGCTTCTCCCCCAGACCCTCTCCTTACCCTCGCTCAACAGGGGAAGGGGAGATGCCCGGG
CCCCTTTGTGAATATCTCAGTGTGGGGGTGCTACCATGAGGGTCTCAGTCCCTGGAGCCAGCAG
GCCCTAGGGGCCCCCCCCCATGAGATCTCAATGCTGTTTGGGGACCCCAAGAGTTTCCTCACCC
GTTCCGTCTGTTTACCCCTCCAATGCCTGATGTTGGTGTCTGCCTCCTGCCTCCAGAGGTCGGC
TTGCTGCTGAGGTCTCCCTGCTCCTGGTGTCAGCAGTGGCAGAGAGCTCTCCCTCCTCCACAGC
CCTCCGCGGGGCCGAGAAGCATGTCTAGGGCCCCCCACCCCAGCTGCCTCTGTGTCTGGGATGA
GCTAAGCAGGGCTGAGCCCCCGCCCTCCACATAGCCACTAAAATGATGGTAATAAAGGCTGGAT
TTGGAGTTTGTA

hide sequence

RefSeq Acc Id:

XM_005331260 ⟹ XP_005331317

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	24,376,662 - 24,379,037 (-)	NCBI
SpeTri2.0	NW_004936580	3,407,044 - 3,409,649 (-)	NCBI

Sequence:

show sequence

GCAGGTGGCAGGGCAGGAGGCTGCACTGTGGGGCCTAGAGAAGAGGACCCCCATTTCCCGTCAG
CCTGCTCTGTGGCTGGGCCCATCTCCCTTTGCCAGAACCAGCTGAAGGCGGCTGGAGCTCATTC
TTGGCCTTGAGGGTGGGAGGGGTGTCTGATTTGCCTGGGTTGACTTGGGGGGGCTCTGGGCATG
GGCGGCGACTCACAGAGGAGATCCGCCTGCTCCCCTCATATCCTGTTATTCAGAAGGCTGTATC
TGCCTGGAATGTGAGTGCCTTTTGTCCTTGGGTGAGGGGGTGACGCAAGTGGCCTCTGGCAGGC
AGCTGTTGTGTCCAGGGTCCGGCTCCAGCTGGGGCAGAACAGCCTGGCTCCTCCTTAGGCCCCG
GAGGAGCTGAAGCAGCGCAATGGCCGACTGCTACACGGACCTAGAGAAGGCGGTGGTGGTGCTG
GTGGAGAACTTCTACAAATACGTGTCTAAGCACAGCCTGGTCAAGAACAAGATCAGCAAGAGCA
GCTTCCGCAAGATGCTTCAGAAGGAGCTCAACCACATGCTGACGGACACGGGGAACCGAAAGGC
CGCCGACAAGCTCATCCAGAACCTGGACGCCAACCACGACGGGCGCATCAGCTTTGACGAGTAC
TGGACCTTGATAGGTGGCATCACCGGCCCCATCGCCAACCTGATCCGGCAGCAGGAGCAGCAGA
GTAGCAGCTAAAGGCCCCGCCACCGCCCTCCAGGCCCCCGGAGCCCAGCCCTGTTCTCTGCCCA
GGCTCCCTCCTTGACCCCGCTGCCCTCCCAGCCCCTCCTGGCTTCTCCCCCAGACCCTCTCCTT
ACCCTCGCTCAACAGGGGAAGGGGAGATGCCCGGGCCCCTTTGTGAATATCTCAGTGTGGGGGT
GCTACCATGAGGGTCTCAGTCCCTGGAGCCAGCAGGCCCTAGGGGCCCCCCCCCATGAGATCTC
AATGCTGTTTGGGGACCCCAAGAGTTTCCTCACCCGTTCCGTCTGTTTACCCCTCCAATGCCTG
ATGTTGGTGTCTGCCTCCTGCCTCCAGAGGTCGGCTTGCTGCTGAGGTCTCCCTGCTCCTGGTG
TCAGCAGTGGCAGAGAGCTCTCCCTCCTCCACAGCCCTCCGCGGGGCCGAGAAGCATGTCTAGG
GCCCCCCACCCCAGCTGCCTCTGTGTCTGGGATGAGCTAAGCAGGGCTGAGCCCCCGCCCTCCA
CATAGCCACTAAAATGATGGTAATAAAGGCTGGATTTGGAGTTTGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005331316	(Get FASTA)	NCBI Sequence Viewer
	XP_005331317	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000590.3
GenBank Protein	KAG3281609	(Get FASTA)	NCBI Sequence Viewer
	KAG3281610	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005331316 ⟸ XM_005331259
- UniProtKB:	I3LX38 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADCYTDLEKAVVVLVENFYKYVSKHSLVKNKISKSSFRKMLQKELNHMLTDTGNRKAADKLIQ NLDANHDGRISFDEYWTLIGGITGPIANLIRQQEQQSSS hide sequence

RefSeq Acc Id:	XP_005331317 ⟸ XM_005331260
- UniProtKB:	I3LX38 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADCYTDLEKAVVVLVENFYKYVSKHSLVKNKISKSSFRKMLQKELNHMLTDTGNRKAADKLIQ NLDANHDGRISFDEYWTLIGGITGPIANLIRQQEQQSSS hide sequence

RefSeq Acc Id:

ENSSTOP00000000590 ⟸ ENSSTOT00000000655

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000657	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000655.3	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	S100/CaBP-9k_CS	UniProtKB/TrEMBL
	S100_Ca-bd_sub	UniProtKB/TrEMBL
NCBI Gene	S100a16	ENTREZGENE
PANTHER	PTHR11639:SF76	UniProtKB/TrEMBL
	S100 CALCIUM-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	S_100	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	S100_CABP	UniProtKB/TrEMBL
SMART	S_100	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	I3LX38	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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