LOC101976043 (ATP-binding cassette sub-family A member 3-like) - Rat Genome Database

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Gene: LOC101976043 (ATP-binding cassette sub-family A member 3-like) Ictidomys tridecemlineatus
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Symbol: LOC101976043
Name: ATP-binding cassette sub-family A member 3-like
RGD ID: 12666481
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (inferred); lipid transport (inferred); transmembrane transport (inferred); FOUND IN intracellular membrane-bounded organelle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344118,500,882 - 118,621,340 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365016,602,898 - 6,719,106 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005323918   ⟹   XP_005323975
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344118,500,882 - 118,621,340 (+)NCBI
SpeTri2.0NW_0049365016,602,898 - 6,719,106 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021752.2
GenBank Protein KAG3259461 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005323975   ⟸   XM_005323918
- UniProtKB: I3NBK5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020081 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029810.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABCA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC101976043 ENTREZGENE
PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 15 UniProtKB/TrEMBL
  PTHR19229 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3NBK5 ENTREZGENE, UniProtKB/TrEMBL