Ccnyl1 (cyclin Y like 1) - Rat Genome Database

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Gene: Ccnyl1 (cyclin Y like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ccnyl1
Name: cyclin Y like 1
RGD ID: 12663521
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase activator activity (inferred); protein kinase binding (inferred); INVOLVED IN flagellated sperm motility (ortholog); regulation of protein phosphorylation (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-Y-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,238,898 - 164,267,810 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366313,867,407 - 3,904,997 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366313,867,403 - 3,905,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccnyl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,238,898 - 164,267,810 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366313,867,407 - 3,904,997 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366313,867,403 - 3,905,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382207,711,640 - 207,756,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2207,711,540 - 207,761,839 (+)EnsemblGRCh38hg38GRCh38
GRCh372208,576,364 - 208,620,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,284,509 - 208,327,434 (+)NCBINCBI36Build 36hg18NCBI36
Celera2202,338,006 - 202,382,779 (+)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,418,315 - 200,463,088 (+)NCBIHuRef
CHM1_12208,582,167 - 208,626,812 (+)NCBICHM1_1
T2T-CHM13v2.02208,185,841 - 208,230,386 (+)NCBIT2T-CHM13v2.0
Ccnyl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,729,963 - 64,764,805 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,729,614 - 64,764,803 (+)EnsemblGRCm39 Ensembl
GRCm38164,691,041 - 64,725,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,690,455 - 64,725,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,737,919 - 64,772,218 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,623,400 - 64,658,217 (+)NCBIMGSCv36mm8
Celera165,192,919 - 65,227,300 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.74NCBI
Ccnyl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,565,484 - 73,601,926 (+)NCBIGRCr8
mRatBN7.2966,071,721 - 66,121,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,071,543 - 66,107,999 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0971,398,186 - 71,434,581 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,398,710 - 71,434,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0971,145,230 - 71,177,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,316,278 - 63,377,369 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1963,498,495 - 63,522,320 (+)NCBI
Celera963,476,952 - 63,513,381 (+)NCBICelera
Cytogenetic Map9q32NCBI
Ccnyl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554577,294,696 - 7,328,773 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554577,295,884 - 7,328,690 (-)NCBIChiLan1.0ChiLan1.0
CCNYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,319,806 - 110,370,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,336,559 - 110,386,737 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B94,947,540 - 94,996,820 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,073,689 - 213,122,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,073,689 - 213,122,423 (+)Ensemblpanpan1.1panPan2
CCNYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,075,459 - 16,113,583 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,075,372 - 16,110,926 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3716,958,908 - 16,997,042 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,010,480 - 16,048,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,010,519 - 16,047,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13715,956,302 - 15,994,435 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03715,929,416 - 15,967,509 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03715,938,661 - 15,976,790 (+)NCBIUU_Cfam_GSD_1.0
CCNYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15110,874,211 - 110,910,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115110,873,912 - 110,910,929 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,437,117 - 122,471,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,493,768 - 93,537,048 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1093,493,742 - 93,536,267 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,833,261 - 105,876,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnyl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247658,235,205 - 8,276,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000016487   ⟹   ENSSTOP00000014757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366313,867,407 - 3,902,403 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031984   ⟹   ENSSTOP00000030462
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366313,868,143 - 3,904,997 (+)Ensembl
RefSeq Acc Id: XM_040294803   ⟹   XP_040150737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303164,238,898 - 164,267,810 (+)NCBI
RefSeq Acc Id: XM_040294805   ⟹   XP_040150739
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303164,239,829 - 164,267,810 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040150737 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150739 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014757.3
  ENSSTOP00000030462.1
GenBank Protein KAG3275089 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040150737   ⟸   XM_040294803
- Peptide Label: isoform X1
- UniProtKB: I3MRM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040150739   ⟸   XM_040294805
- Peptide Label: isoform X2
- UniProtKB: I3MRM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014757   ⟸   ENSSTOT00000016487
RefSeq Acc Id: ENSSTOP00000030462   ⟸   ENSSTOT00000031984
Protein Domains
Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016484 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016487.3 UniProtKB/TrEMBL
  ENSSTOT00000031984.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclin_Y UniProtKB/TrEMBL
NCBI Gene Ccnyl1 ENTREZGENE
PANTHER CYCLIN Y, ISOFORM A UniProtKB/TrEMBL
  CYCLIN-Y-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_CG14939 UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A287DA70_ICTTR UniProtKB/TrEMBL
  I3MRM7 ENTREZGENE, UniProtKB/TrEMBL