Nptxr (neuronal pentraxin receptor) - Rat Genome Database

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Gene: Nptxr (neuronal pentraxin receptor) Ictidomys tridecemlineatus
Analyze
Symbol: Nptxr
Name: neuronal pentraxin receptor
RGD ID: 12658619
Description: ENCODES a protein that exhibits pentraxin receptor activity (ortholog); protein phosphatase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN neuron projection development (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); regulation of postsynaptic specialization assembly (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); brain ischemia (ortholog); congestive heart failure (ortholog); FOUND IN extracellular space (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,538,163 - 9,557,786 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,522,170 - 2,564,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,546,774 - 2,568,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Nptxr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,538,163 - 9,557,786 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,522,170 - 2,564,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,546,774 - 2,568,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPTXR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,818,452 - 38,844,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,818,452 - 38,844,028 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,214,457 - 39,240,033 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,544,403 - 37,569,963 (-)NCBINCBI36Build 36hg18NCBI36
Celera2223,021,120 - 23,046,674 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,180,084 - 22,228,226 (-)NCBIHuRef
CHM1_12239,173,407 - 39,198,951 (-)NCBICHM1_1
T2T-CHM13v2.02239,288,799 - 39,314,406 (-)NCBIT2T-CHM13v2.0
Nptxr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,670,552 - 79,688,910 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,670,552 - 79,688,967 (-)EnsemblGRCm39 Ensembl
GRCm381579,786,351 - 79,804,709 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,786,351 - 79,804,766 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,616,781 - 79,635,139 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,613,606 - 79,631,964 (-)NCBIMGSCv36mm8
Celera1581,905,537 - 81,923,864 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Nptxr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,217,046 - 113,235,122 (-)NCBIGRCr8
mRatBN7.27111,336,660 - 111,354,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,336,664 - 111,354,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,084,519 - 113,102,580 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,308,059 - 115,326,122 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,277,412 - 115,295,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,011,678 - 121,029,754 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,011,680 - 121,029,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,002,637 - 121,020,713 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,023,653 - 118,041,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,058,154 - 118,075,959 (-)NCBI
Celera7107,667,311 - 107,685,387 (-)NCBICelera
Cytogenetic Map7q34NCBI
Nptxr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,925,784 - 24,942,292 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,924,464 - 24,941,417 (-)NCBIChiLan1.0ChiLan1.0
NPTXR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,672,073 - 48,697,746 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,364,213 - 51,408,232 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,731,443 - 19,757,125 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,548,222 - 37,562,249 (-)NCBIpanpan1.1PanPan1.1panPan2
NPTXR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,983,249 - 26,012,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,988,906 - 26,008,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,944,929 - 25,967,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,779,304 - 26,803,082 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,779,409 - 26,803,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,501,288 - 26,525,031 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,812,143 - 26,835,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,988,882 - 27,012,645 (+)NCBIUU_Cfam_GSD_1.0
NPTXR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,207,642 - 9,230,355 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,207,295 - 9,230,354 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,452,962 - 6,475,686 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPTXR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,481,245 - 21,507,680 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045104,235,945 - 104,277,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nptxr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,315,853 - 9,336,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,315,834 - 9,335,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021724524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000035658   ⟹   ENSSTOP00000023986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364922,547,620 - 2,564,874 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000041990   ⟹   ENSSTOP00000027438
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364922,522,170 - 2,564,874 (+)Ensembl
RefSeq Acc Id: XM_021724524   ⟹   XP_021580199
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,538,163 - 9,557,786 (+)NCBI
SpeTri2.0NW_0049364922,546,774 - 2,568,206 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021580199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023986.1
  ENSSTOP00000027438.1
GenBank Protein KAG3290919 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021580199   ⟸   XM_021724524
- UniProtKB: A0A287CRS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000027438   ⟸   ENSSTOT00000041990
RefSeq Acc Id: ENSSTOP00000023986   ⟸   ENSSTOT00000035658


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000032195 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000035658.1 UniProtKB/TrEMBL
  ENSSTOT00000041990.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Pentraxin-related UniProtKB/TrEMBL
NCBI Gene Nptxr ENTREZGENE
PANTHER NEURONAL PENTRAXIN RECEPTOR UniProtKB/TrEMBL
  PENTRAXIN UniProtKB/TrEMBL
Pfam Pentaxin UniProtKB/TrEMBL
PRINTS PENTAXIN UniProtKB/TrEMBL
PROSITE PTX_2 UniProtKB/TrEMBL
SMART PTX UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A287CRS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D1K7_ICTTR UniProtKB/TrEMBL