Slc4a3 (solute carrier family 4 member 3) - Rat Genome Database

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Gene: Slc4a3 (solute carrier family 4 member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Slc4a3
Name: solute carrier family 4 member 3
RGD ID: 12656283
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN cardiac conduction (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH genetic disease (ortholog); heart disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anion exchange protein 3; solute carrier family 4 member 3, transcript variant X1; solute carrier family 4 member 3, transcript variant X2; solute carrier family 4 member 3, transcript variant X3; solute carrier family 4 member 3, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,650,060 - 175,662,989 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,992,814 - 2,008,800 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,992,850 - 2,005,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc4a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,650,060 - 175,662,989 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,992,814 - 2,008,800 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,992,850 - 2,005,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,627,630 - 219,641,971 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,627,394 - 219,641,980 (+)EnsemblGRCh38hg38GRCh38
GRCh372220,492,352 - 220,506,693 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,200,536 - 220,214,946 (+)NCBINCBI36Build 36hg18NCBI36
Build 342220,317,791 - 220,332,197NCBI
Celera2214,262,260 - 214,276,669 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2212,345,224 - 212,359,627 (+)NCBIHuRef
CHM1_12220,498,113 - 220,512,522 (+)NCBICHM1_1
T2T-CHM13v2.02220,112,359 - 220,126,699 (+)NCBIT2T-CHM13v2.0
Slc4a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,522,688 - 75,536,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,522,910 - 75,538,816 (+)EnsemblGRCm39 Ensembl
GRCm38175,546,044 - 75,559,431 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,546,266 - 75,562,172 (+)EnsemblGRCm38mm10GRCm38
MGSCv37175,542,841 - 75,556,006 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,429,444 - 75,442,227 (+)NCBIMGSCv36mm8
Celera176,037,295 - 76,050,423 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.16NCBI
Slc4a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,484,749 - 84,497,746 (+)NCBIGRCr8
mRatBN7.2977,036,243 - 77,053,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl977,037,016 - 77,049,105 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,481,242 - 85,493,343 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,610,117 - 90,622,218 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,996,301 - 89,008,402 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,742,207 - 82,755,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,741,920 - 82,755,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,512,289 - 82,524,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,823,769 - 74,835,860 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,983,838 - 74,995,930 (+)NCBI
Celera974,606,698 - 74,618,789 (+)NCBICelera
Cytogenetic Map9q33NCBI
Slc4a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545313,843,556 - 13,859,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545313,846,444 - 13,859,707 (-)NCBIChiLan1.0ChiLan1.0
SLC4A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213122,257,661 - 122,272,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B122,272,628 - 122,287,010 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,884,750 - 106,899,143 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,475,148 - 225,489,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,475,148 - 225,489,189 (+)Ensemblpanpan1.1panPan2
SLC4A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13726,136,589 - 26,149,312 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3726,136,412 - 26,149,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,962,037 - 26,974,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03726,151,769 - 26,167,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3726,151,769 - 26,165,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13726,055,607 - 26,068,323 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,991,659 - 26,004,366 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03726,012,382 - 26,025,125 (+)NCBIUU_Cfam_GSD_1.0
SLC4A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,630,316 - 121,643,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,629,794 - 121,643,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC4A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,528,845 - 105,543,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,529,093 - 105,543,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604093,858,750 - 93,872,999 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,439,336 - 5,453,801 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,440,213 - 5,453,683 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000003879   ⟹   ENSSTOP00000003478
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365691,992,963 - 2,005,558 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039980   ⟹   ENSSTOP00000028240
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365691,992,814 - 2,008,800 (+)Ensembl
RefSeq Acc Id: XM_005330526   ⟹   XP_005330583
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,650,061 - 175,662,989 (+)NCBI
SpeTri2.0NW_0049365691,992,963 - 2,005,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729993   ⟹   XP_021585668
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,650,060 - 175,662,989 (+)NCBI
SpeTri2.0NW_0049365691,992,850 - 2,005,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729994   ⟹   XP_021585669
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,650,731 - 175,662,989 (+)NCBI
SpeTri2.0NW_0049365691,993,372 - 2,005,754 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040267897   ⟹   XP_040123831
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,650,060 - 175,661,568 (+)NCBI
RefSeq Acc Id: XP_005330583   ⟸   XM_005330526
- Peptide Label: isoform X1
- UniProtKB: A0A287D404 (UniProtKB/TrEMBL),   I3M368 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585668   ⟸   XM_021729993
- Peptide Label: isoform X2
- UniProtKB: I3M368 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585669   ⟸   XM_021729994
- Peptide Label: isoform X3
- UniProtKB: I3M368 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040123831   ⟸   XM_040267897
- Peptide Label: isoform X4
- UniProtKB: I3M368 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000003478   ⟸   ENSSTOT00000003879
RefSeq Acc Id: ENSSTOP00000028240   ⟸   ENSSTOT00000039980

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003859 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003879.3 UniProtKB/TrEMBL
  ENSSTOT00000039980.1 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/TrEMBL
InterPro Anion_exchange UniProtKB/TrEMBL
  Anion_exchange_3 UniProtKB/TrEMBL
  Anion_exchange_CS UniProtKB/TrEMBL
  Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a3 ENTREZGENE
PANTHER PTHR11453 UniProtKB/TrEMBL
  PTHR11453:SF15 UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS ANIONEXCHNGR UniProtKB/TrEMBL
  ANIONEXHNGR3 UniProtKB/TrEMBL
  HCO3TRNSPORT UniProtKB/TrEMBL
PROSITE ANION_EXCHANGER_1 UniProtKB/TrEMBL
  ANION_EXCHANGER_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
UniProt A0A287D404 ENTREZGENE, UniProtKB/TrEMBL
  I3M368 ENTREZGENE, UniProtKB/TrEMBL