Znf687 (zinc finger protein 687) - Rat Genome Database

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Gene: Znf687 (zinc finger protein 687) Ictidomys tridecemlineatus
Analyze
Symbol: Znf687
Name: zinc finger protein 687
RGD ID: 12652426
Description: ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,456,535 - 22,465,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,490,201 - 1,495,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,486,205 - 1,495,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Znf687
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,456,535 - 22,465,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,490,201 - 1,495,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,486,205 - 1,495,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF687
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,281,522 - 151,292,176 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,281,618 - 151,292,176 (+)EnsemblGRCh38hg38GRCh38
GRCh371151,253,998 - 151,264,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,521,415 - 149,531,005 (+)NCBINCBI36Build 36hg18NCBI36
Celera1124,370,082 - 124,379,672 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,632,734 - 122,642,324 (+)NCBIHuRef
CHM1_11152,650,556 - 152,660,127 (+)NCBICHM1_1
T2T-CHM13v2.01150,405,196 - 150,415,869 (+)NCBIT2T-CHM13v2.0
Zfp687
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,901,726 - 94,923,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,913,901 - 94,922,759 (-)EnsemblGRCm39 Ensembl
GRCm38394,994,674 - 95,015,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,006,590 - 95,015,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv37394,810,624 - 94,819,160 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,092,106 - 95,100,642 (-)NCBIMGSCv36mm8
Celera396,437,953 - 96,446,489 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Zfp687
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,261,903 - 185,270,651 (-)NCBIGRCr8
mRatBN7.22182,572,893 - 182,581,641 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,572,662 - 182,583,647 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02196,172,266 - 196,180,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,172,712 - 196,177,775 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,666,952 - 215,675,573 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,906,863 - 189,912,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,114,940 - 175,123,543 (-)NCBICelera
Cytogenetic Map2q34NCBI
Znf687
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588642,521 - 647,396 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955588639,677 - 647,978 (+)NCBIChiLan1.0ChiLan1.0
ZNF687
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,528,849 - 98,539,191 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,279,989 - 98,290,425 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,643,627 - 126,654,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,290,620 - 130,300,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,294,126 - 130,300,949 (+)Ensemblpanpan1.1panPan2
ZNF687
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,350,753 - 60,359,542 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,353,847 - 60,359,619 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,794,215 - 59,802,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,366,936 - 61,375,513 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,367,005 - 61,375,512 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,194,825 - 60,203,398 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,280,989 - 60,289,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,009,380 - 61,017,956 (+)NCBIUU_Cfam_GSD_1.0
ZNF687
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,949,931 - 97,958,882 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,949,931 - 97,959,058 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,150,935 - 107,156,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF687
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,395,592 - 12,405,898 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603811,970,333 - 11,980,799 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf687
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,564,311 - 18,572,479 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,564,311 - 18,589,584 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022504   ⟹   ENSSTOP00000015652
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365801,490,201 - 1,495,005 (+)Ensembl
RefSeq Acc Id: XM_005331208   ⟹   XP_005331265
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505822,456,535 - 22,465,258 (+)NCBI
SpeTri2.0NW_0049365801,486,205 - 1,495,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730442   ⟹   XP_021586117
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505822,456,736 - 22,465,258 (+)NCBI
SpeTri2.0NW_0049365801,487,117 - 1,495,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287562   ⟹   XP_040143496
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505822,456,749 - 22,465,258 (+)NCBI
RefSeq Acc Id: XM_040287563   ⟹   XP_040143497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505822,459,489 - 22,465,258 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005331265   ⟸   XM_005331208
- UniProtKB: I3MU57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586117   ⟸   XM_021730442
- UniProtKB: I3MU57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143496   ⟸   XM_040287562
- UniProtKB: I3MU57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143497   ⟸   XM_040287563
- UniProtKB: I3MU57 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015652   ⟸   ENSSTOT00000022504
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023367 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022504.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zn532-like UniProtKB/TrEMBL
  Znf-C2H2_11 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf687 ENTREZGENE
PANTHER PTHR47222 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 687 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_11 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3MU57 ENTREZGENE, UniProtKB/TrEMBL