Coro2a (coronin 2A) - Rat Genome Database

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Gene: Coro2a (coronin 2A) Ictidomys tridecemlineatus
Analyze
Symbol: Coro2a
Name: coronin 2A
RGD ID: 12650483
Description: ENCODES a protein that exhibits actin filament binding (inferred); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN brush border (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coronin-2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947170,272,327 - 170,316,358 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365246,820,063 - 6,848,371 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365246,819,641 - 6,845,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Coro2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947170,272,327 - 170,316,358 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365246,820,063 - 6,848,371 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365246,819,641 - 6,845,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38998,120,975 - 98,192,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl998,120,975 - 98,192,637 (-)EnsemblGRCh38hg38GRCh38
GRCh379100,883,257 - 100,954,919 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36999,926,294 - 99,994,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 34997,966,032 - 98,034,477NCBI
Celera971,397,550 - 71,469,269 (-)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef970,483,409 - 70,555,156 (-)NCBIHuRef
CHM1_19101,029,674 - 101,101,387 (-)NCBICHM1_1
T2T-CHM13v2.09110,292,922 - 110,364,586 (-)NCBIT2T-CHM13v2.0
Coro2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39446,536,937 - 46,601,929 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl446,536,937 - 46,602,202 (-)EnsemblGRCm39 Ensembl
GRCm38446,536,937 - 46,601,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl446,536,937 - 46,602,202 (-)EnsemblGRCm38mm10GRCm38
MGSCv37446,549,809 - 46,579,312 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36446,558,659 - 46,587,540 (-)NCBIMGSCv36mm8
Celera446,555,568 - 46,613,230 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map424.87NCBI
Coro2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8565,623,820 - 65,677,483 (-)NCBIGRCr8
mRatBN7.2560,825,630 - 60,881,917 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl560,828,247 - 60,859,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx562,799,206 - 62,829,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0564,618,572 - 64,649,265 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0564,587,986 - 64,618,675 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0562,154,526 - 62,210,797 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl562,156,839 - 62,187,930 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0566,682,213 - 66,737,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4563,121,905 - 63,152,843 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1563,122,086 - 63,153,022 (-)NCBI
Celera559,389,825 - 59,420,508 (-)NCBICelera
Cytogenetic Map5q22NCBI
Coro2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541927,348,452 - 27,388,965 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541927,323,164 - 27,386,488 (+)NCBIChiLan1.0ChiLan1.0
CORO2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21141,265,137 - 41,337,032 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1941,267,525 - 41,339,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0969,210,625 - 69,282,434 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1997,335,021 - 97,403,255 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl997,335,026 - 97,368,204 (-)Ensemblpanpan1.1panPan2
CORO2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11155,345,577 - 55,400,092 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1155,345,934 - 55,372,374 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,778,976 - 53,833,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01156,457,510 - 56,512,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1156,459,945 - 56,512,809 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11154,953,123 - 55,007,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,983,784 - 55,038,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01155,680,250 - 55,729,539 (-)NCBIUU_Cfam_GSD_1.0
CORO2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,947,301 - 240,000,918 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,947,299 - 240,000,964 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21268,117,471 - 268,171,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CORO2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11241,226,972 - 41,294,742 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1241,227,349 - 41,295,468 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603838,266,023 - 38,333,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coro2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248252,712,489 - 2,749,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248252,682,632 - 2,749,202 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004048   ⟹   ENSSTOP00000003632
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365246,820,063 - 6,848,371 (-)Ensembl
RefSeq Acc Id: XM_021727001   ⟹   XP_021582676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947170,272,327 - 170,316,358 (-)NCBI
SpeTri2.0NW_0049365246,819,641 - 6,845,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286087   ⟹   XP_040142021
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947170,272,327 - 170,300,887 (-)NCBI
RefSeq Acc Id: XM_040286088   ⟹   XP_040142022
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947170,272,327 - 170,307,529 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021582676 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142021 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142022 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003632.3
GenBank Protein KAG3287582 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021582676   ⟸   XM_021727001
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040142022   ⟸   XM_040286088
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142021   ⟸   XM_040286087
- Peptide Label: isoform X1
- UniProtKB: I3M3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000003632   ⟸   ENSSTOT00000004048
Protein Domains
DUF1899


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004051 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004048.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Coronin UniProtKB/TrEMBL
  DUF1899 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Coro2a ENTREZGENE
PANTHER PTHR10856 UniProtKB/TrEMBL
  PTHR10856:SF2 UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
  WD40_4 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/TrEMBL
  DUF1900 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt I3M3I1 ENTREZGENE, UniProtKB/TrEMBL