Mall (mal, T cell differentiation protein like) - Rat Genome Database

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Gene: Mall (mal, T cell differentiation protein like) Ictidomys tridecemlineatus
Analyze
Symbol: Mall
Name: mal, T cell differentiation protein like
RGD ID: 12648707
Description: ENCODES a protein that exhibits structural constituent of myelin sheath (inferred); INVOLVED IN myelination (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); cone dystrophy (ortholog); Joubert syndrome 4 (ortholog); FOUND IN clathrin-coated vesicle (inferred); cytoplasmic vesicle (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mal, T-cell differentiation protein like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405073136,584 - 177,509 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937185114,810 - 138,338 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937185114,823 - 153,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
myelination  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mall
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405073136,584 - 177,509 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937185114,810 - 138,338 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937185114,823 - 153,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MALL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382110,083,870 - 110,118,139 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2110,083,870 - 110,116,022 (-)EnsemblGRCh38hg38GRCh38
GRCh372110,841,447 - 110,875,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362110,198,736 - 110,230,937 (-)NCBINCBI36Build 36hg18NCBI36
Celera2104,933,285 - 104,965,980 (+)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2103,981,751 - 104,014,500 (-)NCBIHuRef
CHM1_12110,839,647 - 110,878,456 (-)NCBICHM1_1
T2T-CHM13v2.02110,506,185 - 110,514,140 (-)NCBIT2T-CHM13v2.0
Mall
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,546,310 - 127,571,817 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,546,306 - 127,571,852 (-)EnsemblGRCm39 Ensembl
GRCm382127,704,386 - 127,730,772 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,704,386 - 127,729,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv372127,530,126 - 127,555,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362127,395,831 - 127,421,338 (-)NCBIMGSCv36mm8
Celera2128,940,723 - 128,964,505 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.08NCBI
Mall
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83135,381,180 - 135,404,136 (-)NCBIGRCr8
mRatBN7.23114,927,897 - 114,950,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,927,897 - 114,950,785 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,817,454 - 118,840,493 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03127,412,998 - 127,436,037 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03125,073,362 - 125,096,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03120,272,583 - 120,307,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3120,272,583 - 120,306,551 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03127,027,427 - 127,060,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,230,798 - 115,253,566 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13115,136,370 - 115,159,139 (-)NCBI
Celera3113,762,760 - 113,785,416 (-)NCBICelera
Cytogenetic Map3q36NCBI
Mall
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,313,623 - 3,343,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,313,152 - 3,344,950 (+)NCBIChiLan1.0ChiLan1.0
MALL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,661,087 - 17,695,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A17,663,847 - 17,698,712 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A91,608,799 - 91,643,096 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A111,584,239 - 111,618,382 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A111,584,239 - 111,618,382 (-)Ensemblpanpan1.1panPan2
MALL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11735,035,900 - 35,065,332 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1735,037,177 - 35,064,159 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,804,710 - 34,833,832 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,806,979 - 35,836,081 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,806,990 - 35,835,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,935,028 - 34,964,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01735,004,019 - 35,032,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01735,213,355 - 35,242,493 (-)NCBIUU_Cfam_GSD_1.0
MALL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,280,341 - 46,315,694 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,280,331 - 46,315,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MALL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11413,480,233 - 13,515,392 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1413,480,232 - 13,513,287 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660806,176,590 - 6,210,134 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mall
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247491,795,222 - 1,820,995 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247491,795,238 - 1,820,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006897   ⟹   ENSSTOP00000006166
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004937185114,810 - 138,338 (-)Ensembl
RefSeq Acc Id: XM_005342601   ⟹   XP_005342658
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405073136,584 - 159,714 (-)NCBI
SpeTri2.0NW_004937185114,823 - 137,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721526   ⟹   XP_021577201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405073136,584 - 177,509 (-)NCBI
SpeTri2.0NW_004937185114,823 - 153,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721527   ⟹   XP_021577202
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405073167,464 - 177,509 (-)NCBI
SpeTri2.0NW_004937185145,730 - 153,595 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342658 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577201 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577202 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006166.2
Reference Protein Sequences
RefSeq Acc Id: XP_005342658   ⟸   XM_005342601
- Peptide Label: isoform X3
- UniProtKB: I3M8R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577201   ⟸   XM_021721526
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021577202   ⟸   XM_021721527
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000006166   ⟸   ENSSTOT00000006897
Protein Domains
MARVEL


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006907 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006897.3 UniProtKB/TrEMBL
InterPro MAL UniProtKB/TrEMBL
  Marvel UniProtKB/TrEMBL
NCBI Gene Mall ENTREZGENE
PANTHER MAL-LIKE PROTEIN UniProtKB/TrEMBL
  MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PRINTS MALPROTEIN UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
UniProt I3M8R1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 Mall  mal, T cell differentiation protein like    mal, T-cell differentiation protein like  Symbol and/or name change 5135510 APPROVED