Bbs5 (Bardet-Biedl syndrome 5) - Rat Genome Database

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Gene: Bbs5 (Bardet-Biedl syndrome 5) Ictidomys tridecemlineatus
Analyze
Symbol: Bbs5
Name: Bardet-Biedl syndrome 5
RGD ID: 12648186
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (inferred); RNA polymerase II-specific DNA-binding transcription factor binding (inferred); INVOLVED IN cell projection organization (inferred); cilium assembly (inferred); intracellular transport (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 5 (ortholog); FOUND IN BBSome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Bardet-Biedl syndrome 5 protein homolog; Bardet-Biedl syndrome 5, transcript variant X1; Bardet-Biedl syndrome 5, transcript variant X2; Bardet-Biedl syndrome 5, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303131,471,344 - 131,491,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650925,602 - 45,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650925,263 - 45,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bbs5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303131,471,344 - 131,491,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650925,602 - 45,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650925,263 - 45,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382169,479,494 - 169,506,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2169,479,480 - 169,506,655 (+)EnsemblGRCh38hg38GRCh38
GRCh372170,336,004 - 170,363,165 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362170,044,252 - 170,071,411 (+)NCBINCBI36Build 36hg18NCBI36
Build 342170,161,512 - 170,188,671NCBI
Celera2163,955,114 - 163,982,098 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2162,226,706 - 162,253,744 (+)NCBIHuRef
CHM1_12170,341,905 - 170,369,079 (+)NCBICHM1_1
T2T-CHM13v2.02169,956,107 - 169,983,895 (+)NCBIT2T-CHM13v2.0
Bbs5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39269,477,193 - 69,497,915 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl269,477,515 - 69,497,915 (+)EnsemblGRCm39 Ensembl
GRCm38269,646,848 - 69,667,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl269,647,171 - 69,667,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37269,485,312 - 69,505,626 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36269,448,094 - 69,468,408 (+)NCBIMGSCv36mm8
Celera271,316,653 - 71,336,896 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map240.91NCBI
Bbs5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8374,818,104 - 74,839,658 (+)NCBIGRCr8
mRatBN7.2354,410,429 - 54,431,831 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl354,410,775 - 54,431,829 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx357,810,788 - 57,831,808 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0366,394,388 - 66,415,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0364,156,746 - 64,177,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0355,886,695 - 55,907,717 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl355,886,695 - 55,907,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0362,498,107 - 62,519,538 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4351,792,152 - 51,813,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1351,688,442 - 51,709,926 (+)NCBI
Celera353,971,573 - 53,992,440 (+)NCBICelera
Cytogenetic Map3q21NCBI
Bbs5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554495,041,748 - 5,061,806 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554495,043,034 - 5,061,806 (-)NCBIChiLan1.0ChiLan1.0
BBS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21372,139,738 - 72,164,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B72,154,679 - 72,179,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B56,751,129 - 56,776,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B174,220,825 - 174,245,820 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B174,220,825 - 174,245,820 (+)Ensemblpanpan1.1panPan2
BBS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13614,206,917 - 14,233,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3614,207,014 - 14,233,633 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3614,217,670 - 14,244,311 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03614,323,814 - 14,350,375 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3614,323,899 - 14,350,029 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13614,407,767 - 14,434,293 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03614,397,736 - 14,424,293 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03614,509,325 - 14,535,893 (+)NCBIUU_Cfam_GSD_1.0
BBS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1575,852,198 - 75,874,951 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11575,850,860 - 75,874,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21584,972,475 - 84,994,083 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BBS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11054,995,928 - 55,021,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1054,996,240 - 55,021,580 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040144,508,020 - 144,533,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbs5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247877,045,492 - 7,062,347 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247877,045,509 - 7,062,575 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009900   ⟹   ENSSTOP00000008879
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650925,839 - 44,810 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000033676   ⟹   ENSSTOP00000027982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650925,602 - 45,145 (+)Ensembl
RefSeq Acc Id: XM_005324562   ⟹   XP_005324619
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303131,471,837 - 131,490,951 (+)NCBI
SpeTri2.0NW_00493650925,739 - 45,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725900   ⟹   XP_021581575
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303131,471,344 - 131,491,210 (+)NCBI
SpeTri2.0NW_00493650925,263 - 45,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725901   ⟹   XP_021581576
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303131,471,837 - 131,491,210 (+)NCBI
SpeTri2.0NW_00493650925,739 - 45,113 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005324619   ⟸   XM_005324562
- Peptide Label: isoform X1
- UniProtKB: A0A287D381 (UniProtKB/TrEMBL),   I3MEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581575   ⟸   XM_021725900
- Peptide Label: isoform X2
- UniProtKB: I3MEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581576   ⟸   XM_021725901
- Peptide Label: isoform X3
- UniProtKB: I3MEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000008879   ⟸   ENSSTOT00000009900
RefSeq Acc Id: ENSSTOP00000027982   ⟸   ENSSTOT00000033676


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009893 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009900.3 UniProtKB/TrEMBL
  ENSSTOT00000033676.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro BBL5 UniProtKB/TrEMBL
  BBS5/fem-3 UniProtKB/TrEMBL
  DM16_repeat UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Bbs5 ENTREZGENE
PANTHER BARDET-BIEDL SYNDROME 5 PROTEIN UniProtKB/TrEMBL
  PTHR21351 UniProtKB/TrEMBL
Pfam BBL5 UniProtKB/TrEMBL
PIRSF DUF1448 UniProtKB/TrEMBL
SMART DM16 UniProtKB/TrEMBL
UniProt A0A287D381 ENTREZGENE, UniProtKB/TrEMBL
  I3MEG3 ENTREZGENE, UniProtKB/TrEMBL