Gcnt4 (glucosaminyl (N-acetyl) transferase 4)

Gene: Gcnt4 (glucosaminyl (N-acetyl) transferase 4) Ictidomys tridecemlineatus

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Symbol:

Gcnt4

Name:

glucosaminyl (N-acetyl) transferase 4

RGD ID:

12638653

Description:

INVOLVED IN inter-male aggressive behavior (ortholog); kidney morphogenesis (ortholog); neutrophil homeostasis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Sandhoff disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4; glucosaminyl (N-acetyl) transferase 4, core 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,211,120 - 189,234,616 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936549	1,645,256 - 1,647,307 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Sandhoff disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inter-male aggressive behavior (ISO)

kidney morphogenesis (ISO)

neutrophil homeostasis (ISO)

thyroid hormone metabolic process (ISO)

tissue morphogenesis (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Gcnt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,211,120 - 189,234,616 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936549	1,645,256 - 1,647,307 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCNT4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	75,016,969 - 75,054,060 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	75,025,346 - 75,052,558 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	74,321,171 - 74,348,383 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	74,359,045 - 74,362,480 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	70,217,451 - 70,220,886 (-)	NCBI		Celera
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	69,528,134 - 69,531,569 (-)	NCBI		HuRef
CHM1_1	5	73,756,061 - 73,759,496 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	75,497,819 - 75,535,608 (-)	NCBI		T2T-CHM13v2.0

Gcnt4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	97,060,852 - 97,087,422 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	97,061,197 - 97,087,414 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	96,924,344 - 96,950,914 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	96,924,689 - 96,950,906 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	97,694,644 - 97,720,869 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	13	100,561,219 - 100,587,502 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	50.66	NCBI

Gcnt4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,987,944 - 30,017,708 (+)	NCBI		GRCr8
mRatBN7.2	2	28,253,325 - 28,283,082 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	28,252,860 - 28,283,082 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	35,300,997 - 35,331,013 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	33,401,074 - 33,431,089 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	28,215,443 - 28,246,105 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0 Ensembl	2	27,713,880 - 27,780,119 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,825,580 - 46,828,021 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	27,439,605 - 27,441,008 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	24,297,063 - 24,327,571 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

Gcnt4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	25,662,036 - 25,681,948 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	25,661,648 - 25,681,948 (+)	NCBI	ChiLan1.0	ChiLan1.0

GCNT4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	40,247,671 - 40,278,777 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	38,401,330 - 38,432,409 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	40,249,346 - 40,279,559 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	40,863,275 - 40,889,919 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

GCNT4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	31,198,656 - 31,222,523 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	31,217,562 - 31,218,926 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	32,432,498 - 32,441,223 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	31,129,485 - 31,153,307 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	31,059,370 - 31,083,226 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	31,030,795 - 31,054,614 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	31,408,140 - 31,431,040 (+)	NCBI		UU_Cfam_GSD_1.0

GCNT4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	84,105,655 - 84,134,721 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	84,105,652 - 84,135,122 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	85,693,080 - 85,722,498 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GCNT4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	69,392,170 - 69,421,082 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	69,393,958 - 69,395,319 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	18,168,983 - 18,198,423 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcnt4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624951	15,367 - 38,669 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021728895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021728895 ⟹ XP_021584570

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,211,120 - 189,234,086 (-)	NCBI
SpeTri2.0	NW_004936549	1,645,256 - 1,647,307 (+)	NCBI

Sequence:

show sequence

ATGAAGATATTCAAATGTTGTTTTAAATACACCGTACAGCAGAAAGTTTTCATCCTGTTTTTAA
CCCTATGGCTGTTCTCCTTATTAAAGCTTCTAAATGTGAGAAGACTCCTCTTCCCTCAAAGAGG
CATTTACTTAGTTGAGTACTCCTTAAGTACTTCACCTTTTGTAAGGAACAGATACACCCATGTT
AAGGATGAAATTAGGTATGAAGTCAACTGTTCAGGTATCTACGAACAGGAGCCTTTGGAAATTG
GCAAGAGTCTGGAAATAAGAAGGCAAGACATCATCGACTTGGAGGATGATGATGTTGTGGCATT
GACCAGCGACTGTGACATCTATCAGACTCTGAGAAGGTACCATCAGAAGCTAGTTTCAAAGGAG
GAGAAGGGCTTCCCAATAGCTTATTCTTTGGTTGTCCACAAAGATGCAATTATGGTTGAAAGGC
TTATCCATGCTATATACAATCAGCACAATATTTACTGCATCCATTATGACCTTAAGTCAACTAA
CACCTTCAAAGTAGCCATGAACAATTTAGCTAAGTGCTTCTCCAATATTTTCATCGCTTCCAAA
TTAGAGGCTGTGGAATATGCCCACATTTCCAGACTCCAAGCTGACTTAAACTGCTTATCAGACC
TTCTCAAGTCTTCAGTTCAATGGAAATATGTCATCAACTTGTGTGGGCAAGATTTTCCCCTGAA
GTCAAATTTTGAATTAGTGTCAGAGTTGAAGAAACTCAATGGAGCCAATATGTTAGAGACGGTG
AAACCCCCTAACAGTAAAATGGGAAGATTCATGTATCACCATGAGCTCCGACAGGTGCCTTATG
AATATGTGAAGCTACCAATAAGGACGAACATCTCCAAGGAAGCACCCCCTCATAACATTGAGAT
ATTTGTTGGCAGTGCCTATTTTGTTTTAAGTCAAGCATTTGTTAAATATATTTTCAACAACTCC
CTCATTAAAGACTTTTTTGCCTGGTCTAAAGATACCTATTCTCCTGATGAGCACTTTTGGGCTA
CCTTAATTCGGGTACCAGGGATACCTGGGGAGATTTCCAGATCAGCCCAGGATGTGTCTGACCT
ACAGAGCAAGACCCGCCTTGTGAAGTGGAATTATTATGAAGGGTTTTTCTATCCCAGTTGTACT
GGCTCCCACCTTCGCAGTGTGTGTATTTATGGAGCTGCAGAATTAAGGTGGCTTATCAAAGATG
GACATTGGTTTGCTAATAAGTTTGATTCTAAGGTAGACCCTGTCTTGATTAAATGCTTGGCAGA
AAAGCTTGAAGAACAACAGAGGGAATGGATGACTTTGTCTTCGGAAAAGTTATTTATGGATAAA
AAGCCCACGATCATATCATCACAGTAAAACCAAGATGGAAATAAGAGGAGTTATTGGAGTTAAT
ATGGAGTTATATACCATGCCAAGCCCAACGACATTAGAACTTAATCTTATCAGAGTTTGAAAGT
CACCTAAAGTTCTATGCACTATAAGGAAAGCCACCTAGACTTTGATCACACGAGTTGAAGTTGA
TTTTTTTTTAATGTCTGTTTTTGCTTGTAATCTCACTGAGCTAAATCAGAGAGCTTAAGCTTTC
AGTCAGTCATCAAATATTTACTGAGCACCTAACTCTGCATCAGGTACATTTTTTGGAAAACATT
AAGGAATTAAATCCAAGTTGTAATGAGTTGCACAATGCCCTCAGGAAGCAATGGCCTACCCTCA
TCTCACGGCAACCTCAGTATCTTCCTGTTCTCCACATAACAAGGATTCCACTGAAGAAGCTGCT
GGAGTATGTGACAATCACATAAACCACTCATTTCAGGAGAGTGTATAAGCACAGTGACCAGCAT
CTGTTTGTCTCTTAGTTCAGATCCCTAAATGTTTCTTAACCATTCGAATATTAGGAGGAGAGAT
TCCACTACCTCAGAGACACTCAAAGAATCGTCTGATTGCTTGCTTGCCAAAGCATAATTTACCT
TTTGGTGCCTCATGCGTTTAATTCAGGGCTGAGAGGACTCTGTTGGTGTGACATTTATGGAGTA
TGAA

hide sequence

RefSeq Acc Id:

XM_040272742 ⟹ XP_040128676

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,211,120 - 189,228,571 (-)	NCBI

RefSeq Acc Id:

XM_040272743 ⟹ XP_040128677

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,211,120 - 189,234,616 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021584570	(Get FASTA)	NCBI Sequence Viewer
	XP_040128676	(Get FASTA)	NCBI Sequence Viewer
	XP_040128677	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3266524	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021584570 ⟸ XM_021728895

- Sequence:

show sequence

MKIFKCCFKYTVQQKVFILFLTLWLFSLLKLLNVRRLLFPQRGIYLVEYSLSTSPFVRNRYTHV
KDEIRYEVNCSGIYEQEPLEIGKSLEIRRQDIIDLEDDDVVALTSDCDIYQTLRRYHQKLVSKE
EKGFPIAYSLVVHKDAIMVERLIHAIYNQHNIYCIHYDLKSTNTFKVAMNNLAKCFSNIFIASK
LEAVEYAHISRLQADLNCLSDLLKSSVQWKYVINLCGQDFPLKSNFELVSELKKLNGANMLETV
KPPNSKMGRFMYHHELRQVPYEYVKLPIRTNISKEAPPHNIEIFVGSAYFVLSQAFVKYIFNNS
LIKDFFAWSKDTYSPDEHFWATLIRVPGIPGEISRSAQDVSDLQSKTRLVKWNYYEGFFYPSCT
GSHLRSVCIYGAAELRWLIKDGHWFANKFDSKVDPVLIKCLAEKLEEQQREWMTLSSEKLFMDK
KPTIISSQ

hide sequence

RefSeq Acc Id:

XP_040128677 ⟸ XM_040272743

RefSeq Acc Id:

XP_040128676 ⟸ XM_040272742

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Gcnt4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-10-23	Gcnt4	glucosaminyl (N-acetyl) transferase 4		glucosaminyl (N-acetyl) transferase 4, core 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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