Cfap57 (cilia and flagella associated protein 57) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cfap57 (cilia and flagella associated protein 57) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap57
Name: cilia and flagella associated protein 57
RGD ID: 12631476
Description: INVOLVED IN axonemal dynein complex assembly (ortholog); cilium organization (ortholog); single fertilization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); GLUT1 Deficiency Syndrome (ortholog); male infertility (ortholog); FOUND IN sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 57; WD repeat domain 65; Wdr65
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,596,152 - 24,647,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,595,224 - 24,647,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cfap57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,596,152 - 24,647,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,595,224 - 24,647,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,172,330 - 43,254,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,172,330 - 43,254,358 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,638,001 - 43,720,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,410,613 - 43,449,136 (+)NCBINCBI36Build 36hg18NCBI36
Celera141,920,109 - 41,958,656 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,757,760 - 41,839,789 (+)NCBIHuRef
CHM1_1143,754,465 - 43,836,515 (+)NCBICHM1_1
T2T-CHM13v2.0143,042,826 - 43,124,856 (+)NCBIT2T-CHM13v2.0
Cfap57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,411,747 - 118,477,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,411,748 - 118,477,974 (-)EnsemblGRCm39 Ensembl
GRCm384118,554,550 - 118,620,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,554,551 - 118,620,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,227,301 - 118,293,010 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,052,483 - 118,067,379 (-)NCBIMGSCv36mm8
Celera4117,272,730 - 117,339,038 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.84NCBI
Cfap57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,359,787 - 137,433,472 (-)NCBIGRCr8
mRatBN7.25132,074,404 - 132,148,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,074,395 - 132,148,462 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05137,383,065 - 137,458,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.05137,652,118 - 137,670,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,652,892 - 137,669,657 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,383,048 - 137,458,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,439,429 - 141,456,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05141,170,233 - 141,245,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,020,630 - 139,095,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,619,550 - 130,692,901 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cfap57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,799,450 - 2,861,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,799,965 - 2,861,411 (+)NCBIChiLan1.0ChiLan1.0
CFAP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,555,688 - 183,640,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,691,118 - 182,782,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,470,987 - 42,556,101 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,848,111 - 43,933,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,848,369 - 43,933,279 (+)Ensemblpanpan1.1panPan2
CFAP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,903,470 - 16,977,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,903,470 - 16,977,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1517,031,467 - 17,105,537 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,100,632 - 17,159,837 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11516,863,661 - 16,937,788 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,932,621 - 17,006,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,006,223 - 17,080,296 (-)NCBIUU_Cfam_GSD_1.0
CFAP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,550,902 - 89,625,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2089,551,069 - 89,625,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603327,293,179 - 27,369,532 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,520,261 - 2,590,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,520,205 - 2,590,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026070   ⟹   ENSSTOP00000017827
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647424,596,152 - 24,647,896 (+)Ensembl
RefSeq Acc Id: XM_013362812   ⟹   XP_013218266
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBI
SpeTri2.0NW_00493647424,595,224 - 24,647,896 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288488   ⟹   XP_040144422
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505858,771,356 - 58,823,981 (+)NCBI
RefSeq Acc Id: XM_040288489   ⟹   XP_040144423
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505858,771,356 - 58,831,999 (+)NCBI
RefSeq Acc Id: XM_040288490   ⟹   XP_040144424
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013218266 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144422 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144423 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144424 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017827.2
GenBank Protein KAG3282927 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013218266   ⟸   XM_013362812
- Peptide Label: isoform X1
- UniProtKB: I3N0D1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144424   ⟸   XM_040288490
- Peptide Label: isoform X4
- UniProtKB: I3N0D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144423   ⟸   XM_040288489
- Peptide Label: isoform X3
- UniProtKB: I3N0D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144422   ⟸   XM_040288488
- Peptide Label: isoform X2
- UniProtKB: I3N0D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000017827   ⟸   ENSSTOT00000026070


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022840 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026070.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Cfap57 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt I3N0D1 ENTREZGENE, UniProtKB/TrEMBL