Brinp3 (BMP/retinoic acid inducible neural specific 3)

Gene: Brinp3 (BMP/retinoic acid inducible neural specific 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Brinp3

Name:

BMP/retinoic acid inducible neural specific 3

RGD ID:

12631043

Description:

INVOLVED IN negative regulation of cell cycle (ortholog); nervous system development (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); cerebral infarction (ortholog); Chronic Periodontitis (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BMP/retinoic acid inducible neural specific 3, transcript variant X1; BMP/retinoic acid inducible neural specific 3, transcript variant X2; BMP/retinoic acid inducible neural specific 3, transcript variant X3; BMP/retinoic acid-inducible neural-specific protein 3; Fam5c; family with sequence similarity 5, member C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	82,864,573 - 83,220,448 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	713,539 - 1,068,237 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	711,356 - 1,067,856 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aggressive periodontitis (ISO)

cerebral infarction (ISO)

Chronic Periodontitis (ISO)

coronary artery disease (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

myocardial infarction (ISO)

parathyroid carcinoma (ISO)

Peri-Implantitis (ISO)

periodontal disease (ISO)

tongue squamous cell carcinoma (ISO)

ulcerative colitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to retinoic acid (IEA)

central nervous system neuron differentiation (IEA)

negative regulation of cell cycle (IEA,ISO)

negative regulation of mitotic cell cycle (IEA)

nervous system development (IEA,ISO)

positive regulation of neuron differentiation (IEA)

regulation of cell cycle (IEA)

Cellular Component

cytoplasm (IEA)

dendrite (IEA,ISO)

neuronal cell body (IEA,ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Brinp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	82,864,573 - 83,220,448 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	713,539 - 1,068,237 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	711,356 - 1,067,856 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRINP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	190,097,658 - 190,477,864 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	190,097,658 - 190,478,404 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	190,066,788 - 190,446,994 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	188,333,420 - 188,713,382 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	163,175,438 - 163,555,389 (-)	NCBI		Celera
Cytogenetic Map	1	q31.1	NCBI
HuRef	1	161,301,488 - 161,681,433 (-)	NCBI		HuRef
CHM1_1	1	191,488,894 - 191,868,789 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	189,444,081 - 189,824,968 (-)	NCBI		T2T-CHM13v2.0

Brinp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	146,371,367 - 146,778,210 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	146,370,498 - 146,778,210 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	146,495,629 - 146,902,472 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	146,494,760 - 146,902,472 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	148,342,796 - 148,749,602 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	148,257,908 - 148,664,596 (+)	NCBI		MGSCv36	mm8
Celera	1	148,998,933 - 149,401,562 (+)	NCBI		Celera
Cytogenetic Map	1	F	NCBI
cM Map	1	63.24	NCBI

Brinp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	60,964,127 - 61,397,044 (+)	NCBI		GRCr8
mRatBN7.2	13	58,413,883 - 58,846,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	58,413,883 - 58,846,770 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	61,020,501 - 61,453,226 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	62,233,620 - 62,668,293 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	59,535,895 - 59,969,267 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	63,526,486 - 63,959,390 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	63,526,486 - 63,959,332 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	68,507,826 - 68,938,032 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	60,584,348 - 61,024,196 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	60,598,427 - 61,038,280 (+)	NCBI
Celera	13	58,457,115 - 58,885,779 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

Brinp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	27,869,456 - 28,238,978 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	27,870,115 - 28,240,328 (-)	NCBI	ChiLan1.0	ChiLan1.0

BRINP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	59,281,767 - 59,667,440 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	58,957,363 - 59,349,809 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	165,586,510 - 165,972,173 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	169,873,182 - 170,258,838 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	169,873,541 - 170,258,015 (-)	Ensembl	panpan1.1		panPan2

BRINP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	8,181,227 - 8,558,518 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	8,205,916 - 8,558,482 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	8,274,323 - 8,651,253 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	8,208,155 - 8,585,823 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	8,207,162 - 8,589,938 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	8,211,135 - 8,588,313 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	8,572,447 - 8,950,586 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	8,809,824 - 9,186,801 (+)	NCBI		UU_Cfam_GSD_1.0

BRINP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	2,963,527 - 3,367,623 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	2,963,237 - 3,367,629 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	4,783,341 - 5,184,626 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRINP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	38,950,219 - 39,340,920 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	39,147,423 - 39,340,564 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	39,964,726 - 40,359,521 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brinp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624814	3,094,109 - 3,502,857 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624814	3,092,139 - 3,502,625 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005319679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013227 ⟹ ENSSTOP00000011855

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936481	713,539 - 1,068,237 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036727 ⟹ ENSSTOP00000029964

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936481	714,519 - 1,068,237 (+)	Ensembl

RefSeq Acc Id:

XM_005319679 ⟹ XP_005319736

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	82,864,573 - 83,220,448 (+)	NCBI
SpeTri2.0	NW_004936481	711,356 - 1,067,285 (+)	NCBI

Sequence:

show sequence

TTATCACAGTGTGACTGATCCGTAGTGTTTTATTTGGGGTGCTGGTTGTGTCGGGCAGCCTCAC
TACGCCTCCCTCAGTTGCGGCAAGTGAAAGAGTTCAAGGGAAATCCTTGCGAAATGTACTGATG
GAATACTATTAATCCTGATAATAATGCTCCCAGCGCAGGTAACTCTTAAAGAACTGAGAGTGGG
AAGATCAGAACAGGATTTCGGAAGCAGTGCCCTCTTGAATTCTCATTGGATCCTCCCCAGCAGC
CTAAATCATTCTTGCTGCTATATCTATCAGGATGACTACAGCCTTGCTCACTAGTTCTCTCTTT
ATCTCCTTGACTTCAACACATCTTTTTACTTCTCTTTGCAGATTTATCTGTGTTCCACCTCCTG
TTCTCTAAGGTTACACAGCTTCTGTTTTTCTCCACTGTATGGGGATGTGCCGTCTATAAATTTT
CACTTTGCCTAAGTGTGAGCACCCCCTCACTTCTCCCTTACACACACACACACACACACACACA
CACACACACACACACAAACACACACAAAGCTCCTCTTTCACATCTTGCTTCCTTTCCTTGGGGG
TTTGTGGCTCTCTTTGTAACTGGTTTTCACTTGGTTACATGCCACCAGAAACTGCTGATTATTT
CAAAGTCCTACCATCCAGCAGCTCACTAATTTACCTTGATTTGGAAGACCATGGAGTATCTGCT
TGAATCTTGGAAGTATTTTTCTTACAGTCATCTTGCTTCCTGAAATTTCCTCTGGTGTTGAGGG
AAAGCTAAGAGAATGAAGGCTCTAAATCCCCAGTGGAAGCATGATATGGCGGAGCAGAGCTGGT
GCTGAATTGTTCTCTCTGATGGCTCTATGGGAGTGGATAGCACTGAGTCTTCATTGCTGGGTTT
TAGCGGTTGCTGCTGTTTCGGATCAGCATGCCACAAGCCCCTTCGACTGGCTCCTCTCTGATAA
GGGACCCTTCCATCGCTCACAGGAATACACAGATTTTGTGGACAGAAGCCGGCAGGGATTTAGC
ACAAGATACAAGATATACAGGGAGTTTGGCCGCTGGAAAGTAAATAATCTTGCAGTTGAAAGAA
GAAATTTCCTTGGCTCCCCTCTGCCTCTTGCCCCTGAATTCTTCCGCAACATAAGACTTTTGGG
ACGGCGACCTACCCTTCAGCAAATCACAGAAAACCTTATCAAGAAATATGGAACTCATTTCTTG
CTATCTGCTACTCTGGGAGGAGAGGAGTCACTCACAATTTTTGTGGACAAGCGGAAGCTGAGCA
AGCGATCGGAAGGAAGCGATACCAGCACCAACAGCTCTTCTGTCACCCTGGAGACCCTCCATCA
ACTTGCTGCTTCCTACTTCATTGACAGGGACAGCACTCTTCGGAGACTTCACCACATTCAAATT
GCATCCACTGCCATAAAGGTAACAGAAACACGGACGGGTCCTCTTGGCTGCAGTAATTATGACA
ACCTAGATTCTGTGAGTTCTGTTCTGGTTCAAAGTCCTGAGAATAAGATTCAGTTGCAAGGGCT
TCAAGTACTCCTTCCAGACTATCTTCAGGAACGTTTTGTACAAGCAGCTTTGAGCTACATTGCT
TGCAATTCAGAGGGAGAATTTATCTGCAAGGATAATGACTGCTGGTGTCAGTGCGGTCCCAAAT
TTCCAGAATGTAACTGCCCTTCTATGGACATCCAAGCCATGGAAGAGAATCTTCTTCGAATAAC
TGAAACCTGGAAAGCCTACAACAGTGACTTTGAGGAATCAGATGAATTCAAGTTCTTCATGAAA
AGGCTACCCATGAATTATTTCCTCAACACATCAACTATAATGCATTTGTGGACAATGGATTCTA
ATTTTCAGCGACGCTATGAGCAACTGGAGAACAGCATGAAACAACTTTTCCTCAAGGCACAGAA
AATTGTACACAAGCTCTTTAGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCG
AGACAAAGAACCTCAACCTACTGGCTTACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAATG
GCCTCCTGGGCAGCTTTTCAGAAGAGACGCACTCCTGCACATGTCCGAACGACCAGGTTGTCTG
CACTTCATTCCTGCCCTGCACTGTGGGCGACGCCTCGGCCTGCCTGACCTGTGCACCTGACAAC
CGCACCCGCTGTGGCACCTGCAATACTGGTTACATGCTGAGCCAGGGGCTCTGCAAGCCTGAAG
TCGCAGAGTCTACAGATCACTATATTGGCTTTGAGACTGACCTGCAAGACCTTGAGATGAAATA
CTTGTTGCAAAAGACAGACAGACGAATAGAAGTCCATGCCATTTTTATCAGCAATGACATGCGC
CTCAACAGCTGGTTTGACCCCTCCTGGCGGAAACGGATGCTCCTCACCTTGAAGAGTAACAAAT
ACAAGTCAAGCCTGGTGCACATGATCTTGGGTCTCTCTTTACAGATTTGCCTAACTAAAAACAG
CACCTTGGAGCCAGTGTTGGCTGTTTACATCAATCCTTTTGGAGGCAGCCACTCAGAGAGCTGG
TTTATGCCTGTGAATGAAAACAGCTTTCCAGACTGGGAGCGGACTAAGTTGGACCTCCCTCTGC
AGTGTTATAACTGGACACTGACTCTGGGGAACAAATGGAAGACATTTTTTGAGACAGTACACAT
CTACCTGAGGAGTCGCATCAAGTCAAATGGCCCCAATGGCAATGAGAGCATTTACTACGAACCT
TTGGAGTTTATTGATCCTTCCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTGTTTG
GCTACAGCATGCACTTCGACCCTGAAGCAATTCGGGACCTGATTTTGCAGCTGGACTACCCCTA
TACTCAGGGATCCCAGGACTCAGCACTTTTGCAACTACTAGAGATAAGAGACCGTGTAAATAAA
CTCTCCCCACCTGGTCAGCGTCGTCTAGATCTTTTCTCTTGCTTGCTTCGTCATAGACTCAAGC
TGTCTACTAGTGAGGTGGTGAGGATCCAATCTGCTCTGCAGGCGTTTAATGCCAAATTGCCAAA
CACAATGGATTATGACACGACCAAATTATGTAGTTAACCATAAATGTCAAGCACAACCCAAAAT
CTTGAAGGAGTTTTTACAGTGCTTTTGTGGAACAGTTTATGTTTGGAAGAGTAAATTTAAATTG
TCTTTTCAATATCTGTCTTATATCAGTCAATAACATTGGATGGCAATTTACACACATGAACTTG
CTGACAATGAATATATTATACTGCAGTTTTGGTTTATGAATGAAATAAATACTGACCAGTCTAG
AAGACATTCTACTTTTTACAATAAATTTCATTTGTAATTTTATATGTTCCGTGGCAATGCTTTT
GTGCATTACATCCTCTAGAGGGAACATAAAAAGACACCAATAAAATTTTGTAGCTGAACAGTTA
TT

hide sequence

RefSeq Acc Id:

XM_021722542 ⟹ XP_021578217

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	82,867,490 - 83,220,448 (+)	NCBI
SpeTri2.0	NW_004936481	714,254 - 1,067,856 (+)	NCBI

Sequence:

show sequence

TATTTTTAATGAGCTGTGTCTAAGAAATGACGCTTTGTAGTATGTATGTTTTACAAAACCTTAA
TCGTTGTCTTCATCCAACTTCATCCGATCGCTTAGTAGGACTTAAAATTGCTGAAGACTTCCCA
GGATTAGTGTTGAATTGCTGACGATCGGCACTCCTCGCCTTCCTCCATCAACTCCCAAGAATCT
GGAGGGTGGCCGGGTGAGGGAAAGAGTTAGATTTCAACTTGGAGCTGGGGCTTGGAAAATCAGG
TTGAAGTTAAAAGCAAAAAAAAAGTGAGGGTTTGGGAGCTGCCTAGTGTATATTATATGCACTT
TAAAGTTGGTCTTTTACCGCCTCCTCGCCTTTCTGGAGGGGGTGCGAGAGGTGGGAGGACCTGG
GTCTGGCGTCCACTGGAGAGGGGGTGGTGCTTCTTGGCCGAGGGTTTCTGCCGGTTCTGTAGCC
AAACGGTGGTAGAGTTGAAGTCTCCGATGGCTGTTCTCCTAGTCCCTAAGAGTTGAACCAGAGA
GCCTTTTACTTTGCTCCAGGTCCAGACCGTGATCAGTCCTTTAAAGCAGGTACCTCTTTCTAAT
GGGAGTCTGGCAGGGAAACGCAGGGTAGGCTCTACTTCCGAAGATAAAATGCATGGTTCCAGCT
GTGTGAGACACCAACCGGCTGTTTGAAAAGAGGAAGAGGTGACCAGGGTTACAAATTAACCCTA
GGATTGCTTACAAATATCCTAGCGAGTCAAACGTATATAAGCAAGGAAGAAAGCATCAGGATAT
AAAACTGTCACAGCAGCGTGGAAGACTGATGATTCAGATTCTGGGGACTTTTCCTTTTACGTGC
TATTTAGATTTGTTTGCCATCATGCAGTTAAGCAGGTGTTGAGGGAAAGCTAAGAGAATGAAGG
CTCTAAATCCCCAGTGGAAGCATGATATGGCGGAGCAGAGCTGGTGCTGAATTGTTCTCTCTGA
TGGCTCTATGGGAGTGGATAGCACTGAGTCTTCATTGCTGGGTTTTAGCGGTTGCTGCTGTTTC
GGATCAGCATGCCACAAGCCCCTTCGACTGGCTCCTCTCTGATAAGGGACCCTTCCATCGCTCA
CAGGAATACACAGATTTTGTGGACAGAAGCCGGCAGGGATTTAGCACAAGATACAAGATATACA
GGGAGTTTGGCCGCTGGAAAGTAAATAATCTTGCAGTTGAAAGAAGAAATTTCCTTGGCTCCCC
TCTGCCTCTTGCCCCTGAATTCTTCCGCAACATAAGACTTTTGGGACGGCGACCTACCCTTCAG
CAAATCACAGAAAACCTTATCAAGAAATATGGAACTCATTTCTTGCTATCTGCTACTCTGGGAG
GAGAGGAGTCACTCACAATTTTTGTGGACAAGCGGAAGCTGAGCAAGCGATCGGAAGGAAGCGA
TACCAGCACCAACAGCTCTTCTGTCACCCTGGAGACCCTCCATCAACTTGCTGCTTCCTACTTC
ATTGACAGGGACAGCACTCTTCGGAGACTTCACCACATTCAAATTGCATCCACTGCCATAAAGG
TAACAGAAACACGGACGGGTCCTCTTGGCTGCAGTAATTATGACAACCTAGATTCTGTGAGTTC
TGTTCTGGTTCAAAGTCCTGAGAATAAGATTCAGTTGCAAGGGCTTCAAGTACTCCTTCCAGAC
TATCTTCAGGAACGTTTTGTACAAGCAGCTTTGAGCTACATTGCTTGCAATTCAGAGGGAGAAT
TTATCTGCAAGGATAATGACTGCTGGTGTCAGTGCGGTCCCAAATTTCCAGAATGTAACTGCCC
TTCTATGGACATCCAAGCCATGGAAGAGAATCTTCTTCGAATAACTGAAACCTGGAAAGCCTAC
AACAGTGACTTTGAGGAATCAGATGAATTCAAGTTCTTCATGAAAAGGCTACCCATGAATTATT
TCCTCAACACATCAACTATAATGCATTTGTGGACAATGGATTCTAATTTTCAGCGACGCTATGA
GCAACTGGAGAACAGCATGAAACAACTTTTCCTCAAGGCACAGAAAATTGTACACAAGCTCTTT
AGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCGAGACAAAGAACCTCAACCT
ACTGGCTTACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAATGGCCTCCTGGGCAGCTTTTC
AGAAGAGACGCACTCCTGCACATGTCCGAACGACCAGGTTGTCTGCACTTCATTCCTGCCCTGC
ACTGTGGGCGACGCCTCGGCCTGCCTGACCTGTGCACCTGACAACCGCACCCGCTGTGGCACCT
GCAATACTGGTTACATGCTGAGCCAGGGGCTCTGCAAGCCTGAAGTCGCAGAGTCTACAGATCA
CTATATTGGCTTTGAGACTGACCTGCAAGACCTTGAGATGAAATACTTGTTGCAAAAGACAGAC
AGACGAATAGAAGTCCATGCCATTTTTATCAGCAATGACATGCGCCTCAACAGCTGGTTTGACC
CCTCCTGGCGGAAACGGATGCTCCTCACCTTGAAGAGTAACAAATACAAGTCAAGCCTGGTGCA
CATGATCTTGGGTCTCTCTTTACAGATTTGCCTAACTAAAAACAGCACCTTGGAGCCAGTGTTG
GCTGTTTACATCAATCCTTTTGGAGGCAGCCACTCAGAGAGCTGGTTTATGCCTGTGAATGAAA
ACAGCTTTCCAGACTGGGAGCGGACTAAGTTGGACCTCCCTCTGCAGTGTTATAACTGGACACT
GACTCTGGGGAACAAATGGAAGACATTTTTTGAGACAGTACACATCTACCTGAGGAGTCGCATC
AAGTCAAATGGCCCCAATGGCAATGAGAGCATTTACTACGAACCTTTGGAGTTTATTGATCCTT
CCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTGTTTGGCTACAGCATGCACTTCGA
CCCTGAAGCAATTCGGGACCTGATTTTGCAGCTGGACTACCCCTATACTCAGGGATCCCAGGAC
TCAGCACTTTTGCAACTACTAGAGATAAGAGACCGTGTAAATAAACTCTCCCCACCTGGTCAGC
GTCGTCTAGATCTTTTCTCTTGCTTGCTTCGTCATAGACTCAAGCTGTCTACTAGTGAGGTGGT
GAGGATCCAATCTGCTCTGCAGGCGTTTAATGCCAAATTGCCAAACACAATGGATTATGACACG
ACCAAATTATGTAGTTAACCATAAATGTCAAGCACAACCCAAAATCTTGAAGGAGTTTTTACAG
TGCTTTTGTGGAACAGTTTATGTTTGGAAGAGTAAATTTAAATTGTCTTTTCAATATCTGTCTT
ATATCAGTCAATAACATTGGATGGCAATTTACACACATGAACTTGCTGACAATGAATATATTAT
ACTGCAGTTTTGGTTTATGAATGAAATAAATACTGACCAGTCTAGAAGACATTCTACTTTTTAC
AATAAATTTCATTTGTAATTTTATATGTTCCGTGGCAATGCTTTTGTGCATTACATCCTCTAGA
GGGAACATAAAAAGACACCAATAAAATTTTGTAGCTGAACAGTTATTAAAAAGAAGTGCTGTGG
GATTCCTTTTTTCCATGAAATGAGTTCTATTTTGATATAGTTTGTTAGAACCTGGGGAGAATTC
ACCAAGATTTTTAATGGAAACATTTGAAGGTCCCTTGCAATTAACTTTATGGAAAACCCAATTC
GGTAGAATGCTTAGTATTCAGTTGTTATTTTATGGGTCATAGCATAATGGCAGTGATATGTTTA
CTACCTGTGTTGAGAAACCAATCCTAGAGACACCATTATTATCAAAATAGTCAAATAAACTAAT
TCCCAAGCAAATATCAAACCATTTAGGCAAACATAGAGGAAAAGCAGTGTGATTCTAAGACACA
TCACGGAGAAAGTAAACCCTTAATTTCCTTAGCAACTTGCTTTATCGTTTTTTCTTTATATTCT
GATAAACAATAATCAGCATACTCTGCACAATCATTTTCATTTCAAGTACTGAAAAGCTACTTTC
CAGCACTTTACCAACATCAATAAAATAGCACTTCCAGAATTCTCAAATTGTAATGTAATGGTGT
AAAATAAATGCTCAAATAACTAGCTCAAATGACAATTTTTTT

hide sequence

RefSeq Acc Id:

XM_021722543 ⟹ XP_021578218

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	82,866,658 - 83,220,448 (+)	NCBI
SpeTri2.0	NW_004936481	713,395 - 1,066,971 (+)	NCBI

Sequence:

show sequence

CATAAAAGTACTCCAACTGCAGCGTCACCCCATCCCCAGTCTCACATTCAAGGGCTTTTCCCCC
TTGGTTCCTACCGAGAGACTCCTATTGATGCTGGTTCACACCACTTGGCGCCCCTCACCCTTCA
CTAGTTTCTACCTGGTCTCTTTGCCAGTCCGGTCGTCCTGCCTGACAAGCCAGTGCCATCAGCG
TCCGTGACTTCATTTGAAGAAACGAGGGCTTAGTGTAATTCGCCAATTCAAACATCCTCTTTGG
AGGACTGCTGCTGTTGCGCAGGGGTGGGGGGAAAAAAAAGCAACTTTCAGTGCAGTCGGATCTT
TTCTTCTTAATCTAGCCTACTCCAGTAAGGCACAGACATTCGGTGTTTAGGTGTTGAGGGAAAG
CTAAGAGAATGAAGGCTCTAAATCCCCAGTGGAAGCATGATATGGCGGAGCAGAGCTGGTGCTG
AATTGTTCTCTCTGATGGCTCTATGGGAGTGGATAGCACTGAGTCTTCATTGCTGGGTTTTAGC
GGTTGCTGCTGTTTCGGATCAGCATGCCACAAGCCCCTTCGACTGGCTCCTCTCTGATAAGGGA
CCCTTCCATCGCTCACAGGAATACACAGATTTTGTGGACAGAAGCCGGCAGGGATTTAGCACAA
GATACAAGATATACAGGGAGTTTGGCCGCTGGAAAGTAAATAATCTTGCAGTTGAAAGAAGAAA
TTTCCTTGGCTCCCCTCTGCCTCTTGCCCCTGAATTCTTCCGCAACATAAGACTTTTGGGACGG
CGACCTACCCTTCAGCAAATCACAGAAAACCTTATCAAGAAATATGGAACTCATTTCTTGCTAT
CTGCTACTCTGGGAGGAGAGGAGTCACTCACAATTTTTGTGGACAAGCGGAAGCTGAGCAAGCG
ATCGGAAGGAAGCGATACCAGCACCAACAGCTCTTCTGTCACCCTGGAGACCCTCCATCAACTT
GCTGCTTCCTACTTCATTGACAGGGACAGCACTCTTCGGAGACTTCACCACATTCAAATTGCAT
CCACTGCCATAAAGGTAACAGAAACACGGACGGGTCCTCTTGGCTGCAGTAATTATGACAACCT
AGATTCTGTGAGTTCTGTTCTGGTTCAAAGTCCTGAGAATAAGATTCAGTTGCAAGGGCTTCAA
GTACTCCTTCCAGACTATCTTCAGGAACGTTTTGTACAAGCAGCTTTGAGCTACATTGCTTGCA
ATTCAGAGGGAGAATTTATCTGCAAGGATAATGACTGCTGGTGTCAGTGCGGTCCCAAATTTCC
AGAATGTAACTGCCCTTCTATGGACATCCAAGCCATGGAAGAGAATCTTCTTCGAATAACTGAA
ACCTGGAAAGCCTACAACAGTGACTTTGAGGAATCAGATGAATTCAAGTTCTTCATGAAAAGGC
TACCCATGAATTATTTCCTCAACACATCAACTATAATGCATTTGTGGACAATGGATTCTAATTT
TCAGCGACGCTATGAGCAACTGGAGAACAGCATGAAACAACTTTTCCTCAAGGCACAGAAAATT
GTACACAAGCTCTTTAGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCGAGAC
AAAGAACCTCAACCTACTGGCTTACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAATGGCCT
CCTGGGCAGCTTTTCAGAAGAGACGCACTCCTGCACATGTCCGAACGACCAGGTTGTCTGCACT
TCATTCCTGCCCTGCACTGTGGGCGACGCCTCGGCCTGCCTGACCTGTGCACCTGACAACCGCA
CCCGCTGTGGCACCTGCAATACTGGTTACATGCTGAGCCAGGGGCTCTGCAAGCCTGAAGTCGC
AGAGTCTACAGATCACTATATTGGCTTTGAGACTGACCTGCAAGACCTTGAGATGAAATACTTG
TTGCAAAAGACAGACAGACGAATAGAAGTCCATGCCATTTTTATCAGCAATGACATGCGCCTCA
ACAGCTGGTTTGACCCCTCCTGGCGGAAACGGATGCTCCTCACCTTGAAGAGTAACAAATACAA
GTCAAGCCTGGTGCACATGATCTTGGGTCTCTCTTTACAGATTTGCCTAACTAAAAACAGCACC
TTGGAGCCAGTGTTGGCTGTTTACATCAATCCTTTTGGAGGCAGCCACTCAGAGAGCTGGTTTA
TGCCTGTGAATGAAAACAGCTTTCCAGACTGGGAGCGGACTAAGTTGGACCTCCCTCTGCAGTG
TTATAACTGGACACTGACTCTGGGGAACAAATGGAAGACATTTTTTGAGACAGTACACATCTAC
CTGAGGAGTCGCATCAAGTCAAATGGCCCCAATGGCAATGAGAGCATTTACTACGAACCTTTGG
AGTTTATTGATCCTTCCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTGTTTGGCTA
CAGCATGCACTTCGACCCTGAAGCAATTCGGGACCTGATTTTGCAGCTGGACTACCCCTATACT
CAGGGATCCCAGGACTCAGCACTTTTGCAACTACTAGAGATAAGAGACCGTGTAAATAAACTCT
CCCCACCTGGTCAGCGTCGTCTAGATCTTTTCTCTTGCTTGCTTCGTCATAGACTCAAGCTGTC
TACTAGTGAGGTGGTGAGGATCCAATCTGCTCTGCAGGCGTTTAATGCCAAATTGCCAAACACA
ATGGATTATGACACGACCAAATTATGTAGTTAACCATAAATGTCAAGCACAACCCAAAATCTTG
AAGG

hide sequence

RefSeq Acc Id:

XM_040276760 ⟹ XP_040132694

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	82,866,469 - 83,220,448 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005319736	(Get FASTA)	NCBI Sequence Viewer
	XP_021578217	(Get FASTA)	NCBI Sequence Viewer
	XP_021578218	(Get FASTA)	NCBI Sequence Viewer
	XP_040132694	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011855.2
	ENSSTOP00000029964.1
GenBank Protein	KAG3258501	(Get FASTA)	NCBI Sequence Viewer
	KAG3258502	(Get FASTA)	NCBI Sequence Viewer
	KAG3258503	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005319736 ⟸ XM_005319679

- UniProtKB:

I3MKL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFV
DRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLI
KKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDTSTNSSSVTLETLHQLAASYFIDRDSTL
RRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFV
QAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEES
DEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCH
KQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTSFLPCTVGDASA
CLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHA
IFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYINPF
GGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNG
NESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLL
EIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS

hide sequence

RefSeq Acc Id:

XP_021578218 ⟸ XM_021722543

- UniProtKB:

I3MKL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFV
DRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLI
KKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDTSTNSSSVTLETLHQLAASYFIDRDSTL
RRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFV
QAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEES
DEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCH
KQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTSFLPCTVGDASA
CLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHA
IFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYINPF
GGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNG
NESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLL
EIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS

hide sequence

RefSeq Acc Id:

XP_021578217 ⟸ XM_021722542

- UniProtKB:

I3MKL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFV
DRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLI
KKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDTSTNSSSVTLETLHQLAASYFIDRDSTL
RRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFV
QAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEES
DEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCH
KQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTSFLPCTVGDASA
CLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHA
IFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYINPF
GGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNG
NESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLL
EIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS

hide sequence

RefSeq Acc Id:	XP_040132694 ⟸ XM_040276760
- UniProtKB:	I3MKL1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000011855 ⟸ ENSSTOT00000013227

RefSeq Acc Id:

ENSSTOP00000029964 ⟸ ENSSTOT00000036727

Protein Domains

MACPF

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013227	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013227.3	UniProtKB/TrEMBL
	ENSSTOT00000036727.1	UniProtKB/TrEMBL
InterPro	BRINP	UniProtKB/TrEMBL
	Growth_fac_rcpt_cys_sf	UniProtKB/TrEMBL
	MACPF	UniProtKB/TrEMBL
NCBI Gene	Brinp3	ENTREZGENE
PANTHER	BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 3	UniProtKB/TrEMBL
	PTHR15564	UniProtKB/TrEMBL
Pfam	BRINP	UniProtKB/TrEMBL
	MACPF	UniProtKB/TrEMBL
SMART	MACPF	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57184	UniProtKB/TrEMBL
UniProt	I3MKL1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar