Fxyd6 (FXYD domain containing ion transport regulator 6) - Rat Genome Database

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Gene: Fxyd6 (FXYD domain containing ion transport regulator 6) Ictidomys tridecemlineatus
Analyze
Symbol: Fxyd6
Name: FXYD domain containing ion transport regulator 6
RGD ID: 12630149
Description: ENCODES a protein that exhibits ion channel regulator activity (inferred); sodium channel regulator activity (inferred); INVOLVED IN monoatomic ion transmembrane transport (inferred); regulation of monoatomic ion transport (inferred); ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); CD3epsilon deficiency (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic membrane (ortholog); presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FXYD domain containing ion transport regulator 6, transcript variant X1; FXYD domain containing ion transport regulator 6, transcript variant X2; FXYD domain containing ion transport regulator 6, transcript variant X3; FXYD domain-containing ion transport regulator 6; LOC101955591
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,053,559 - 100,084,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,974,971 - 3,006,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,974,968 - 3,005,778 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fxyd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,053,559 - 100,084,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,974,971 - 3,006,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,974,968 - 3,005,778 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FXYD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811117,836,981 - 117,877,430 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11117,836,976 - 117,877,486 (-)EnsemblGRCh38hg38GRCh38
GRCh3711117,707,696 - 117,748,145 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,212,903 - 117,252,577 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411117,212,902 - 117,252,577NCBI
Celera11114,865,536 - 114,905,978 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,641,523 - 113,681,997 (-)NCBIHuRef
CHM1_111117,593,263 - 117,633,769 (-)NCBICHM1_1
T2T-CHM13v2.011117,853,389 - 117,893,827 (-)NCBIT2T-CHM13v2.0
Fxyd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,280,768 - 45,307,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,281,483 - 45,307,457 (+)EnsemblGRCm39 Ensembl
GRCm38945,369,470 - 45,396,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,370,185 - 45,396,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv37945,178,268 - 45,204,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36945,121,420 - 45,147,154 (+)NCBIMGSCv36mm8
Celera942,646,344 - 42,676,314 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Fxyd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,575,578 - 54,602,715 (+)NCBIGRCr8
mRatBN7.2845,679,054 - 45,705,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,678,885 - 45,705,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx851,173,695 - 51,207,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,452,465 - 49,486,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0847,323,174 - 47,350,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,676,520 - 49,703,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,676,540 - 49,703,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,302,871 - 48,329,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,323,818 - 48,371,958 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1848,332,583 - 48,380,724 (+)NCBI
Celera845,262,115 - 45,288,850 (+)NCBICelera
Cytogenetic Map8q22NCBI
Fxyd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,052,801 - 19,090,582 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,053,627 - 19,090,582 (-)NCBIChiLan1.0ChiLan1.0
FXYD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,538,029 - 118,578,554 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,642,957 - 119,683,501 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,671,570 - 112,712,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,604,076 - 116,644,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,606,903 - 116,609,890 (-)Ensemblpanpan1.1panPan2
FXYD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,801,790 - 15,807,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,771,390 - 15,807,601 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,851,858 - 15,857,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,718,135 - 15,749,121 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,712,720 - 15,749,118 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,881,440 - 15,887,157 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,784,739 - 15,790,436 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,826,071 - 15,831,805 (+)NCBIUU_Cfam_GSD_1.0
FXYD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1945,182,396 - 45,218,249 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,261,910 - 50,297,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FXYD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,203,609 - 109,243,743 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,206,421 - 109,209,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,808,203 - 16,848,173 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fxyd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,213,457 - 13,253,400 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,213,579 - 13,252,710 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000030035   ⟹   ENSSTOP00000021404
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365422,974,971 - 3,006,011 (-)Ensembl
RefSeq Acc Id: XM_005328311   ⟹   XP_005328368
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,613 (-)NCBI
SpeTri2.0NW_0049365422,974,968 - 3,005,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005328312   ⟹   XP_005328369
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,621 (-)NCBI
SpeTri2.0NW_0049365422,974,968 - 3,005,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040285293   ⟹   XP_040141227
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,064 (-)NCBI
RefSeq Acc Id: XM_040285294   ⟹   XP_040141228
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,073 (-)NCBI
RefSeq Acc Id: XM_040285295   ⟹   XP_040141229
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,071 (-)NCBI
RefSeq Acc Id: XM_040285296   ⟹   XP_040141230
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,080 (-)NCBI
RefSeq Acc Id: XM_040285297   ⟹   XP_040141231
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,053,559 - 100,084,085 (-)NCBI
RefSeq Acc Id: XP_005328368   ⟸   XM_005328311
- Peptide Label: isoform X4
- UniProtKB: I3NAK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328369   ⟸   XM_005328312
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040141231   ⟸   XM_040285297
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040141230   ⟸   XM_040285296
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040141228   ⟸   XM_040285294
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141229   ⟸   XM_040285295
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040141227   ⟸   XM_040285293
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000021404   ⟸   ENSSTOT00000030035


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023242 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030035.2 UniProtKB/TrEMBL
Gene3D-CATH Single helix bin UniProtKB/TrEMBL
InterPro FXYD_motif UniProtKB/TrEMBL
  Ion-transport_regulator_FXYD UniProtKB/TrEMBL
NCBI Gene LOC101955591 ENTREZGENE
PANTHER FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 6-RELATED UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA UniProtKB/TrEMBL
Pfam ATP1G1_PLM_MAT8 UniProtKB/TrEMBL
PROSITE FXYD UniProtKB/TrEMBL
UniProt I3NAK7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Fxyd6  FXYD domain containing ion transport regulator 6  LOC101955591  FXYD domain-containing ion transport regulator 6  Symbol and/or name change 5135510 APPROVED