Znf654 (zinc finger protein 654) - Rat Genome Database

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Gene: Znf654 (zinc finger protein 654) Ictidomys tridecemlineatus
Analyze
Symbol: Znf654
Name: zinc finger protein 654
RGD ID: 12627727
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101973273
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049711,604,587 - 1,683,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366101,604,575 - 1,683,021 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366101,604,591 - 1,683,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf654
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049711,604,587 - 1,683,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366101,604,575 - 1,683,021 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366101,604,591 - 1,683,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF654
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38388,059,255 - 88,144,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl388,059,255 - 88,144,660 (+)EnsemblGRCh38hg38GRCh38
GRCh37388,108,405 - 88,193,810 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36388,270,952 - 88,276,504 (+)NCBINCBI36Build 36hg18NCBI36
Build 34388,271,164 - 88,273,912NCBI
Celera388,942,131 - 88,947,592 (+)NCBICelera
Cytogenetic Map3p11.1NCBI
HuRef388,201,768 - 88,207,323 (+)NCBIHuRef
CHM1_1388,141,379 - 88,146,934 (+)NCBICHM1_1
T2T-CHM13v2.0388,135,096 - 88,220,495 (+)NCBIT2T-CHM13v2.0
Zfp654
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391664,600,710 - 64,672,300 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1664,600,710 - 64,672,015 (-)EnsemblGRCm39 Ensembl
GRCm381664,780,347 - 64,851,937 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1664,780,347 - 64,851,652 (-)EnsemblGRCm38mm10GRCm38
MGSCv371664,780,173 - 64,786,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361664,722,549 - 64,728,523 (-)NCBIMGSCv36mm8
Celera1665,074,987 - 65,080,961 (-)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1637.1NCBI
Zfp654
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81115,947,425 - 16,011,957 (-)NCBIGRCr8
mRatBN7.2112,500,892 - 2,565,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,503,508 - 2,565,637 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0111,831,378 - 1,895,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl111,835,185 - 1,836,897 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0111,811,954 - 1,876,664 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4112,120,729 - 2,123,544 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1112,120,489 - 2,182,377 (-)NCBI
Celera112,482,441 - 2,547,648 (-)NCBICelera
Cytogenetic Map11p12NCBI
ZNF654
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2288,216,425 - 88,302,008 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1388,221,235 - 88,306,796 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0388,197,558 - 88,283,050 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1390,309,186 - 90,395,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl390,309,186 - 90,395,198 (+)Ensemblpanpan1.1panPan2
ZNF654
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131114,287 - 207,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31117,435 - 247,237 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha31157,349 - 250,290 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03197,631 - 190,614 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3198,938 - 230,942 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13177,668 - 170,327 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.031124,661 - 217,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031429,341 - 522,297 (-)NCBIUU_Cfam_GSD_1.0
ZNF654
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13167,807,263 - 167,895,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113167,807,705 - 167,895,783 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF654
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12288,782,957 - 88,864,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2288,782,940 - 88,799,268 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604177,850,024 - 77,932,500 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf654
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247894,449,045 - 4,525,664 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247894,448,957 - 4,528,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000020738   ⟹   ENSSTOP00000018493
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366101,604,575 - 1,683,021 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000028125   ⟹   ENSSTOP00000021362
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366101,608,237 - 1,682,909 (-)Ensembl
RefSeq Acc Id: XM_013362343   ⟹   XP_013217797
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049711,604,587 - 1,683,015 (-)NCBI
SpeTri2.0NW_0049366101,604,591 - 1,683,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286933   ⟹   XP_040142867
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049711,604,587 - 1,654,775 (-)NCBI
RefSeq Acc Id: XM_040286934   ⟹   XP_040142868
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049711,604,587 - 1,654,775 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013217797   ⟸   XM_013362343
- Peptide Label: isoform X1
- UniProtKB: I3N297 (UniProtKB/TrEMBL),   I3NAG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142868   ⟸   XM_040286934
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040142867   ⟸   XM_040286933
- Peptide Label: isoform X2
- UniProtKB: I3NAG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000018493   ⟸   ENSSTOT00000020738
RefSeq Acc Id: ENSSTOP00000021362   ⟸   ENSSTOT00000028125
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024555 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020738.2 UniProtKB/TrEMBL
  ENSSTOT00000028125.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC101973273 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 654 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN RLF UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3N297 ENTREZGENE, UniProtKB/TrEMBL
  I3NAG5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Znf654  zinc finger protein 654  LOC101973273    Symbol and/or name change 5135510 APPROVED