LOC101962609 (protein SCO2 homolog, mitochondrial) - Rat Genome Database

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Gene: LOC101962609 (protein SCO2 homolog, mitochondrial) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101962609 (Ensembl: SCO2)
Name: protein SCO2 homolog, mitochondrial
RGD ID: 12625473
Description: ENCODES a protein that exhibits copper chaperone activity (inferred); copper ion binding (inferred); metal ion binding (inferred); INVOLVED IN copper ion homeostasis (ortholog); in utero embryonic development (ortholog); muscle system process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cardiomyopathy (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred); myofibril (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945319,260 - 320,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629318,581 - 320,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629318,581 - 320,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101962609
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945319,260 - 320,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629318,581 - 320,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629318,581 - 320,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,523,568 - 50,526,442 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,523,568 - 50,526,461 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,961,997 - 50,964,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,308,863 - 49,310,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 342249,252,142 - 49,254,116NCBI
Celera2234,838,024 - 34,840,895 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,853,015 - 33,855,886 (-)NCBIHuRef
CHM1_12250,920,734 - 50,923,605 (-)NCBICHM1_1
T2T-CHM13v2.02251,034,133 - 51,037,007 (-)NCBIT2T-CHM13v2.0
Sco2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,255,833 - 89,258,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,255,840 - 89,258,049 (-)EnsemblGRCm39 Ensembl
GRCm381589,371,630 - 89,373,891 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,371,637 - 89,373,846 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,202,068 - 89,204,249 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1591,500,778 - 91,502,959 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.85NCBI
LOC106146232
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,503,882 - 33,505,417 (-)NCBIChiLan1.0ChiLan1.0
LOC100976808
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,443,429 - 60,444,452 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,134,243 - 63,135,270 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,769,899 - 30,772,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,879,824 - 49,881,834 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,879,867 - 49,880,667 (-)Ensemblpanpan1.1panPan2
SCO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,783,116 - 16,790,011 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,788,287 - 16,790,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,760,885 - 16,767,714 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,509,646 - 17,516,477 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11017,233,936 - 17,240,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,557,049 - 17,563,783 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,689,178 - 17,696,008 (+)NCBIUU_Cfam_GSD_1.0
SCO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5220,814 - 225,307 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15220,801 - 222,678 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,557,622 - 110,559,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,995,153 - 32,997,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,995,196 - 32,995,996 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,345,404 - 92,347,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC106007592
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752256,376 - 257,825 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752256,243 - 257,829 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025443   ⟹   ENSSTOP00000014949
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936629318,581 - 320,795 (+)Ensembl
RefSeq Acc Id: XM_040276237   ⟹   XP_040132171
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945319,260 - 320,804 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040132171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014949.1
GenBank Protein KAG3290660 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040132171   ⟸   XM_040276237
- UniProtKB: I3MS54 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014949   ⟸   ENSSTOT00000025443
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026780 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025443.2 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro SCO1/SenC UniProtKB/TrEMBL
  Synth_of_cyt-c-oxidase_Sco1/2 UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene LOC101962609 ENTREZGENE
PANTHER PROTEIN SCO2 HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12151 UniProtKB/TrEMBL
Pfam SCO1-SenC UniProtKB/TrEMBL
PIRSF SCO1 UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt I3MS54 ENTREZGENE, UniProtKB/TrEMBL