Papolb (poly(A) polymerase beta) - Rat Genome Database

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Pathways
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Gene: Papolb (poly(A) polymerase beta) Ictidomys tridecemlineatus
Analyze
Symbol: Papolb
Name: poly(A) polymerase beta
RGD ID: 12620133
Description: PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344141,070,786 - 141,074,814 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367651,061,846 - 1,066,002 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Papolb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344141,070,786 - 141,074,814 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367651,061,846 - 1,066,002 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAPOLB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3874,857,738 - 4,862,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl74,857,738 - 4,862,030 (-)EnsemblGRCh38hg38GRCh38
GRCh3774,897,369 - 4,901,661 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3674,863,895 - 4,868,151 (-)NCBINCBI36Build 36hg18NCBI36
Build 3474,670,611 - 4,674,866NCBI
Celera74,856,457 - 4,860,713 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef74,812,979 - 4,817,235 (-)NCBIHuRef
CHM1_174,897,092 - 4,901,348 (-)NCBICHM1_1
T2T-CHM13v2.074,974,940 - 4,979,232 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v274,943,724 - 4,947,980 (-)NCBI
Papolb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,513,495 - 142,515,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,511,593 - 142,515,831 (-)EnsemblGRCm39 Ensembl
GRCm385142,527,740 - 142,530,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,525,838 - 142,530,076 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,003,694 - 143,006,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365142,780,214 - 142,782,550 (-)NCBIMGSCv36mm8
Celera5139,582,766 - 139,585,102 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.53NCBI
Papolb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,157,757 - 17,160,103 (+)NCBIGRCr8
mRatBN7.21212,044,275 - 12,046,621 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1212,044,480 - 12,046,656 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,846,725 - 12,849,071 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,469,956 - 13,472,302 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,501,082 - 12,503,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,112,426 - 14,114,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01216,140,417 - 16,142,763 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,440,762 - 12,443,108 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,470,689 - 12,473,030 (+)NCBI
Celera1213,826,942 - 13,829,288 (+)NCBICelera
Cytogenetic Map12p11NCBI
Papolb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,872,735 - 10,946,235 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,941,776 - 10,946,235 (+)NCBIChiLan1.0ChiLan1.0
PAPOLB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v269,821,428 - 9,828,341 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,146,132 - 58,153,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,110,442 - 5,114,734 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,150,895 - 5,155,214 (-)NCBIpanpan1.1PanPan1.1panPan2
PAPOLB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,792,167 - 12,795,557 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,263,022 - 14,265,654 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,928,469 - 12,931,099 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,928,651 - 12,930,777 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1612,739,190 - 12,741,822 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,672,206 - 12,674,838 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,948,336 - 12,950,968 (+)NCBIUU_Cfam_GSD_1.0
PAPOLB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.133,696,416 - 3,700,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,347,054 - 4,351,384 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAPOLB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,788,585 - 16,790,623 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660905,129,059 - 5,133,138 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Papolb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474028,451,467 - 28,457,301 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005343023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005343023   ⟹   XP_005343080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344141,070,786 - 141,074,814 (+)NCBI
SpeTri2.0NW_0049367651,061,846 - 1,066,002 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005343080 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005343080   ⟸   XM_005343023
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Papolb ENTREZGENE