Csn3 (casein kappa) - Rat Genome Database

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Gene: Csn3 (casein kappa) Ictidomys tridecemlineatus
Analyze
Symbol: Csn3
Name: casein kappa
RGD ID: 12610485
Description: INVOLVED IN lactation (ortholog); protein stabilization (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kappa-casein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,951,342 - 15,959,150 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365984,404,810 - 4,408,556 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,951,342 - 15,959,150 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365984,404,810 - 4,408,556 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,238,381 - 70,251,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,238,382 - 70,251,474 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,104,098 - 71,117,149 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36471,142,922 - 71,151,734 (+)NCBINCBI36Build 36hg18NCBI36
Build 34471,289,078 - 71,297,903NCBI
Celera468,466,083 - 68,474,894 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef466,910,558 - 66,919,370 (+)NCBIHuRef
CHM1_1471,144,749 - 71,153,560 (+)NCBICHM1_1
T2T-CHM13v2.0473,578,064 - 73,590,918 (+)NCBIT2T-CHM13v2.0
Csn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,073,438 - 88,080,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,073,438 - 88,080,524 (+)EnsemblGRCm39 Ensembl
GRCm38587,925,579 - 87,932,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl587,925,579 - 87,932,665 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,354,658 - 88,361,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,000,194 - 89,006,825 (+)NCBIMGSCv36mm8
MGSCv36587,530,032 - 87,536,663 (+)NCBIMGSCv36mm8
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
Csn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,433,277 - 20,439,830 (-)NCBIGRCr8
mRatBN7.21420,154,032 - 20,160,585 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,154,032 - 20,160,587 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1420,084,452 - 20,091,024 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01421,403,338 - 21,409,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,134,107 - 20,140,687 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,803,738 - 21,810,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,803,735 - 21,810,314 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01421,713,823 - 21,720,376 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,674,805 - 21,681,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11421,674,804 - 21,681,342 (-)NCBI
Celera1419,556,681 - 19,563,235 (-)NCBICelera
Cytogenetic Map14p21NCBI
Csn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554472,616,337 - 2,623,845 (-)NCBIChiLan1.0ChiLan1.0
CSN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,831,428 - 59,844,294 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1460,027,992 - 60,040,858 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,972,361 - 53,981,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,315,922 - 60,324,767 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,315,922 - 60,324,767 (-)Ensemblpanpan1.1panPan2
CSN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,613,026 - 59,629,095 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1359,621,106 - 59,626,552 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,340,066 - 59,355,523 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01360,413,616 - 60,423,445 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1360,413,594 - 60,423,451 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,021,744 - 60,037,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01359,526,194 - 59,541,664 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01360,673,187 - 60,688,671 (+)NCBIUU_Cfam_GSD_1.0
CSN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,099,131 - 67,106,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,099,131 - 67,109,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28148,440,837 - 148,444,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1718,728,058 - 18,740,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl718,730,495 - 18,737,644 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660844,183,679 - 4,199,536 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248901,657,370 - 1,660,393 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005333303   ⟹   XP_005333360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528515,951,342 - 15,959,150 (-)NCBI
SpeTri2.0NW_0049365984,404,810 - 4,408,556 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333360 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3276488 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333360   ⟸   XM_005333303
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Csn3 ENTREZGENE