Slc31a2 (solute carrier family 31 member 2)

Gene: Slc31a2 (solute carrier family 31 member 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Slc31a2

Name:

solute carrier family 31 member 2

RGD ID:

12608337

Description:

ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); INVOLVED IN copper ion transmembrane transport (ortholog); copper ion transport (ortholog); intracellular copper ion homeostasis (ortholog); FOUND IN late endosome (inferred); late endosome membrane (inferred); lysosomal membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable low affinity copper uptake protein 2; solute carrier family 31 member 2, transcript variant X1; solute carrier family 31 member 2, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	182,831,638 - 182,842,003 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	424,207 - 435,052 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	421,236 - 434,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

copper ion import (IEA)

copper ion transmembrane transport (IEA,ISO)

copper ion transport (IEA,ISO)

intracellular copper ion homeostasis (IEA,ISO)

regulation of copper ion transmembrane transport (IEA,ISO)

Cellular Component

late endosome (IEA)

late endosome membrane (IEA)

lysosomal membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

recycling endosome (IEA)

Molecular Function

copper ion transmembrane transporter activity (IEA,ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Slc31a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	182,831,638 - 182,842,003 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	424,207 - 435,052 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	421,236 - 434,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC31A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	113,151,007 - 113,164,140 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	113,150,976 - 113,164,140 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	115,913,287 - 115,926,420 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	114,953,059 - 114,966,243 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	112,992,850 - 113,005,958	NCBI
Celera	9	86,561,147 - 86,574,330 (+)	NCBI		Celera
Cytogenetic Map	9	q32	ENTREZGENE
HuRef	9	85,520,955 - 85,534,138 (+)	NCBI		HuRef
CHM1_1	9	116,059,787 - 116,072,968 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	125,349,843 - 125,362,976 (+)	NCBI		T2T-CHM13v2.0

Slc31a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	62,198,630 - 62,216,649 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	62,180,799 - 62,216,648 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	62,280,393 - 62,298,412 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	62,262,562 - 62,298,411 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	61,947,479 - 61,959,445 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	61,772,806 - 61,784,772 (+)	NCBI		MGSCv36	mm8
Celera	4	60,958,637 - 60,970,603 (+)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	33.07	NCBI

Slc31a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	80,753,589 - 80,764,126 (+)	NCBI		GRCr8
mRatBN7.2	5	75,738,008 - 75,748,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	75,738,024 - 75,748,542 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	78,137,819 - 78,148,322 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	79,954,915 - 79,965,418 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	79,930,439 - 79,940,936 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	78,120,606 - 78,131,111 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	78,120,607 - 78,131,114 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	82,242,372 - 82,252,910 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	79,281,958 - 79,292,436 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	79,293,234 - 79,296,349 (+)	NCBI
Celera	5	74,680,083 - 74,690,581 (+)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

Slc31a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	14,332,749 - 14,343,700 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	14,332,749 - 14,343,363 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC31A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	26,204,166 - 26,226,615 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	26,206,525 - 26,228,974 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	84,249,284 - 84,271,596 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	112,622,147 - 112,644,611 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	112,622,147 - 112,635,294 (+)	Ensembl	panpan1.1		panPan2

SLC31A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	67,522,316 - 67,531,215 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	67,526,465 - 67,529,976 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	65,927,260 - 65,936,154 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	68,647,339 - 68,656,224 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	68,647,483 - 68,656,223 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	67,165,010 - 67,173,902 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	67,187,093 - 67,195,990 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	67,932,818 - 67,941,712 (+)	NCBI		UU_Cfam_GSD_1.0

SLC31A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	253,794,913 - 253,805,282 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	253,795,005 - 253,805,287 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	284,589,392 - 284,599,675 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC31A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	26,406,173 - 26,419,782 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	26,406,011 - 26,419,634 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	16,382,432 - 16,396,002 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc31a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	21,945,498 - 21,955,282 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	21,945,493 - 21,955,303 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000000555 ⟹ ENSSTOP00000000502

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936559	424,207 - 435,052 (-)	Ensembl

RefSeq Acc Id:

XM_005329694 ⟹ XP_005329751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	182,831,638 - 182,842,003 (+)	NCBI
SpeTri2.0	NW_004936559	424,546 - 434,872 (-)	NCBI

Sequence:

show sequence

CCGCGCGGCCCGGGTCGGTATCGCGGCGGCTGCGGGTCGGAGTAGCCTCCGGGAGACCCGAGCA
AGCAGACGCGGCCTTGGGCCGCCCGCGCGTTCAGTATGGCGATGCATTTCATCTTCTCAGACGA
GGCTGTGCTTCTGTTTGATTTCTGGAGTGTCCACAGCCCTGCAGGCATGGCCCTTTCTGTGCTG
GTGGTTCTGCTCATGGCTGTGCTGTATGAAGGCATCAAAGTTGGCAAAGCCAAGCTGCTCCACC
ACACTCTAATGAACCTGCCCACTGCCACCAGCCAGCAGCTCATCTTGGAGACAGACCAGGATTC
TGCAGGCACAGGCTCAGACTCATCCCCAGTCAGCAGCACCAACCTCAGGTGGTTTTTGTGTCAC
TTTGGCCAGTCTCTAGTCCATGTCATTCAAGTGGTCATTGGCTACTTCATGATGCTGGCTGTAA
TGTCCTACAACATCTGGATTTTCCTCGGTGTGGTCCTGGGCTCGGCTGTGGGCTACTACCTAGC
CTACCCACTTCTCCGCCTGGTTTAGCTGGTGAAGGATTTGCAGGCACTCAGGGCTGGAGGGAGC
TGGGCACCTTCTTCCAGGCATTGTACTTCAGTGGATTTTTCTCCTGGTGGCCATTCCTCACCTC
CTTTTCAGCTCCTGGCAAATTGGAGCTGAAGCCAGCACTTGTTCCCTGGAGTTCAGAGGCCACT
GAAGTCACCCTCTCCTCGGCCAGCCTGCACAGGGCTGGGCCTATTCTGGTGCCTTAAGAAGGCT
GCTGTGACCAATGGAGAAAGAAAGCAGAGACTACAGCCTGGGGACAGGGTTGCTGAGCCTAGAC
ACACCCCTGTGACGCAGGAATAAGAATTTCCAAAGATCTTCAGGACAGGGAGGTGGGATCTGGG
TGAGGAAGGCCACAGAACCTGGAAACCCTCTCTCTGCTTTGTGCCTTATCGACAGGAGCATCTT
TCTGGACTTCTGTCTTTGGGGGACAGAGACCAAAATAGCTCCTTTTTATGACCTTCGTGCCTTT
GGAACACATAGTTTGTCCACATGATCCATAGAATAGACTAAGACTTTTACATTTTTCCCACTGA
ACTCCTGATTAGCACTTTTGCACATTCATACAAAACAAAGTTTTTCAAAGAAATTATTTCATCT
TATTCATGATGTAAGGCAGCAACCGCTGAGACCTGCCTCCCTTTCTTGGGGAGAGAATAAGTGA
CAACTGATTAAAGGCAGCTGGTTTGTCCTCTGGATGGACTGAGCTCCTTCCACCCGACAGCACT
GCCCACAGGGGAGGGTGATCTAATGGCCGAGGTGTCTGGGAGCGCCTCATGACCTCAATGTCCC
CCCCTTTTAATCTGGATCCTCTTTTATCACTTACTACCCACTCATAGAGACCTGTGGGGAAACA
AATTCAGTTACTGAAAATACAGGTTAAGCCTAAGGGGACATCGACTGGATGCAGGGAGCAGTCA
AACCAAAGCCAGTGCATTTTTAGTTAGACAAACTCTGGATATTTTAACCTCTTCACTTTACAGA
AAAGAAAATCTTTTTATCACTTTACAGGGAGAGAAAATCGCTGCTGTGGACTATAATACCCATG
TTCAAGTACCTCACAGGCTAGATGAAAAGATGTCTTAAGCTTTGGGAATTAAAAACAATTACAT
TTTAATAAATACATATTTTTAAACA

hide sequence

RefSeq Acc Id:

XM_040286171 ⟹ XP_040142105

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	182,832,900 - 182,842,003 (+)	NCBI

RefSeq Acc Id:

XM_040286172 ⟹ XP_040142106

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	182,836,637 - 182,842,003 (+)	NCBI

RefSeq Acc Id:

XM_040286173 ⟹ XP_040142107

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	182,831,653 - 182,842,003 (+)	NCBI

RefSeq Acc Id:

XM_040286174 ⟹ XP_040142108

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	182,837,555 - 182,842,003 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005329751	(Get FASTA)	NCBI Sequence Viewer
	XP_040142105	(Get FASTA)	NCBI Sequence Viewer
	XP_040142106	(Get FASTA)	NCBI Sequence Viewer
	XP_040142107	(Get FASTA)	NCBI Sequence Viewer
	XP_040142108	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000502.3
GenBank Protein	KAG3287742	(Get FASTA)	NCBI Sequence Viewer
	KAG3287743	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005329751 ⟸ XM_005329694
- Peptide Label:	isoform X1
- UniProtKB:	I3LWW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAMHFIFSDEAVLLFDFWSVHSPAGMALSVLVVLLMAVLYEGIKVGKAKLLHHTLMNLPTATSQ QLILETDQDSAGTGSDSSPVSSTNLRWFLCHFGQSLVHVIQVVIGYFMMLAVMSYNIWIFLGVV LGSAVGYYLAYPLLRLV hide sequence

RefSeq Acc Id:	XP_040142107 ⟸ XM_040286173
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040142105 ⟸ XM_040286171
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040142106 ⟸ XM_040286172
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040142108 ⟸ XM_040286174
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSSTOP00000000502 ⟸ ENSSTOT00000000555

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000555	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000555.3	UniProtKB/TrEMBL
InterPro	Cop_transporter	UniProtKB/TrEMBL
NCBI Gene	Slc31a2	ENTREZGENE
PANTHER	LOW AFFINITY COPPER UPTAKE PROTEIN 2-RELATED	UniProtKB/TrEMBL
	PTHR12483	UniProtKB/TrEMBL
Pfam	Ctr	UniProtKB/TrEMBL
UniProt	I3LWW5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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