Oxsm (3-oxoacyl-ACP synthase, mitochondrial)

Gene: Oxsm (3-oxoacyl-ACP synthase, mitochondrial) Ictidomys tridecemlineatus

Analyze

Symbol:

Oxsm

Name:

3-oxoacyl-ACP synthase, mitochondrial

RGD ID:

12605137

Description:

ENCODES a protein that exhibits 3-oxoacyl-[acyl-carrier-protein] synthase activity (inferred); acyltransferase activity (inferred); INVOLVED IN acyl-CoA metabolic process (inferred); fatty acid biosynthetic process (inferred); medium-chain fatty acid biosynthetic process (inferred); FOUND IN cytosol (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	184,159,101 - 184,166,433 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	17,298,777 - 17,305,007 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	17,298,641 - 17,302,954 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acyl-CoA metabolic process (IEA)

fatty acid biosynthetic process (IEA)

medium-chain fatty acid biosynthetic process (IEA)

monocarboxylic acid metabolic process (IEA)

short-chain fatty acid biosynthetic process (IEA)

Cellular Component

cytosol (IEA)

mitochondrion (IEA)

Molecular Function

3-oxoacyl-[acyl-carrier-protein] synthase activity (IEA)

acyltransferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Oxsm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	184,159,101 - 184,166,433 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	17,298,777 - 17,305,007 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	17,298,641 - 17,302,954 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OXSM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	25,790,090 - 25,794,531 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	25,782,917 - 25,794,534 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	25,831,581 - 25,836,022 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	25,806,575 - 25,811,029 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	25,768,436 - 25,772,898 (+)	NCBI		Celera
Cytogenetic Map	3	p24.2	NCBI
HuRef	3	25,776,553 - 25,781,015 (+)	NCBI		HuRef
CHM1_1	3	25,781,541 - 25,786,000 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	25,786,612 - 25,797,297 (+)	NCBI		T2T-CHM13v2.0

Oxsm
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	6,219,955 - 6,231,111 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	6,219,955 - 6,231,111 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	16,238,652 - 16,249,808 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	16,238,652 - 16,249,808 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	17,071,173 - 17,082,322 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	15,031,926 - 15,043,075 (-)	NCBI		MGSCv36	mm8
Celera	14	11,933,669 - 11,944,766 (-)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	7.08	NCBI

Oxsm
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	11,641,177 - 11,645,370 (+)	NCBI		GRCr8
mRatBN7.2	15	9,210,443 - 9,215,852 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	9,210,547 - 9,214,558 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	11,353,346 - 11,356,828 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	12,266,135 - 12,269,617 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	10,566,610 - 10,570,092 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	10,462,380 - 10,466,496 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	10,462,106 - 10,466,496 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	14,507,711 - 14,511,770 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	10,761,610 - 10,765,356 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	10,762,673 - 10,765,356 (+)	NCBI
Celera	15	9,249,455 - 9,252,948 (+)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

Oxsm
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	17,653,438 - 17,658,171 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	17,644,800 - 17,661,097 (+)	NCBI	ChiLan1.0	ChiLan1.0

OXSM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	25,742,992 - 25,753,910 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	25,747,760 - 25,761,286 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	25,683,801 - 25,697,227 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	26,015,343 - 26,026,222 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	26,021,806 - 26,026,222 (+)	Ensembl	panpan1.1		panPan2

OXSM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	18,034,532 - 18,045,630 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	18,034,526 - 18,045,217 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	18,032,163 - 18,043,226 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	18,337,417 - 18,348,700 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	18,337,423 - 18,342,365 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	18,156,214 - 18,167,276 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	18,259,330 - 18,270,399 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	18,373,009 - 18,384,089 (-)	NCBI		UU_Cfam_GSD_1.0

OXSM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	12,685,974 - 12,695,244 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	12,685,893 - 12,692,148 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	14,291,830 - 14,296,658 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OXSM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	70,447,061 - 70,460,690 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	70,457,228 - 70,460,650 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	43,587,980 - 43,599,795 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Oxsm
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	3,714,360 - 3,718,678 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624788	3,701,751 - 3,721,743 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005317277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000004957 ⟹ ENSSTOP00000004445

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	17,298,777 - 17,305,007 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000034415 ⟹ ENSSTOP00000030593

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	17,299,686 - 17,305,007 (+)	Ensembl

RefSeq Acc Id:

XM_005317277 ⟹ XP_005317334

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	184,159,101 - 184,166,433 (+)	NCBI
SpeTri2.0	NW_004936473	17,298,641 - 17,302,954 (+)	NCBI

Sequence:

show sequence

CGCAGGTCTTCGGGCGTATCCCAGAGCTTCTTGGAAGAGTCTTTCCACGCACGCGTTCAAGGGC
CCAGTCACCTCGGACTGCCTGGTATCACCTAAGGTGACGCGGCGCAAGGTCAACGGACTCAGTG
CGCTCCGACGTGACGCACGTGAGCGAGCGCGTACGAACGTACGTGCGTGTCTGCACGCGCATGC
TCACGCGAGAGTCAGCGCGGCGGAAGGGCCGTGCGGTCGCCGAAAGCCCTTAAAACAGGAATGT
GTTTCTGATCGTCTGAATCTCAACCATGTTGTCAAACTCCTTACATTTCCTAAAAATTACAAGC
AGTCGTTTTCTATCTTCAAGATTATGCCAACAATTAATAAATGAAAGGAGGTTTTTTGGAACTG
TGCCAACATCCAGAAGAGTTGTCATTACAGGAATTGGTTTAGTGACTCCCCTTGGTGTTGGAAC
TCAATTGGTATGGGATCGTCTTCTCCGAGGAGAAAGTGGAATTGTTTCACTGCTTGATGAAGAA
TATAAGAATATTCCTTGTAGTGTTGCTGCTTATGTGCCAAGAGGTTTTGATGAAGGTCAGTTTA
ATGAACAAAACTTTGTGTCCAAATCAGATATTAAGTCCATGTCTTCTCCCACTATCATGGCCAT
TGGGGCAGCAGAGTTAGCCATGAAAGATTCTGGCTGGCATCCTCAGTCAGAAGCTGATCAGGTG
GCTACTGGTGTTGCAATTGGCATGGGAATGGTTCCTCTGGAAGTTGTTTCTGAAACTGCTTTGA
TGTTTCAGACAAAAGGTTATAATAAAGTCAGCCCATTCTTTGTCCCTAGGATTCTGATTAATAT
GGCAGCAGGCCAGGTCAGCATTCGACATAATCTCAAGGGCCCCAATCATGCAGTATCAACAGCC
TGTACCACAGGAGCTCATGCTGTGGGAGACTCTTTTAGATTTATAGCCCACGGTGATGCTGACG
TGATGGTGGCTGGAGGTACAGATTCTTGTATTAGTCCTTTATCTCTTGCTGGGTTTTCCAGAGC
CCGGGCTCTGAGCACAAACTCAGATCCTAAGTTAGCATGTCGACCATTTCATCCAAAAAGAGAT
GGTTTCGTAATGGGAGAAGGTGCAGCTGTGTTGGTGCTGGAAGAATATGAGCATGCTGTTCAAA
GAAGAGCCCGGATCTATGCAGAAGTTTTGGGCTATGGACTCTCAGGTGATGCTGGTCACATAAC
TGCCCCTGATCCTGAAGGAGAAGGTGCATTAAGATGTATGACTGCTGCTATAAAAGATGCAGGG
GTTCAACCTGAAGACATATCCTATGTCAACGCACATGCTACTTCCACACCATTGGGAGATGCTG
CTGAAAACAAAGCCATCAAACATCTCTTTAAAGACCATGCATATGCCCTTGCAGTTTCCTCAAC
GAAGGGAGCCACAGGACATCTTCTGGGAGCTGCAGGGGCAGTTGAGGCAGCTTTTACTGCATTA
GCTTGTTATTATCAAAAACTACCACCTACTTTAAATCTGGATTGCACAGAACCAGAATTTGATC
TGAATTATGTTCCACTAAAGGCACAGGAATGGAAAACTGATAAACGATGTATTGGACTCACCAA
TTCTTTTGGTTTTGGGGGTACTAATGCAACACTTTGTATTGCTGGTATATAGTAATTTTTAATT
AAACAATTTTTAAATGTGGAAATAATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005317334	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004445.3
	ENSSTOP00000030593.1
GenBank Protein	KAG3279508	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005317334 ⟸ XM_005317277

- UniProtKB:

I3M566 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSNSLHFLKITSSRFLSSRLCQQLINERRFFGTVPTSRRVVITGIGLVTPLGVGTQLVWDRLL
RGESGIVSLLDEEYKNIPCSVAAYVPRGFDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMK
DSGWHPQSEADQVATGVAIGMGMVPLEVVSETALMFQTKGYNKVSPFFVPRILINMAAGQVSIR
HNLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSD
PKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEG
ALRCMTAAIKDAGVQPEDISYVNAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLL
GAAGAVEAAFTALACYYQKLPPTLNLDCTEPEFDLNYVPLKAQEWKTDKRCIGLTNSFGFGGTN
ATLCIAGI

hide sequence

RefSeq Acc Id:

ENSSTOP00000030593 ⟸ ENSSTOT00000034415

RefSeq Acc Id:

ENSSTOP00000004445 ⟸ ENSSTOT00000004957

Protein Domains

Ketosynthase family 3 (KS3)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004977	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004957.3	UniProtKB/TrEMBL
	ENSSTOT00000034415.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.47.10	UniProtKB/TrEMBL
InterPro	3-oxoacyl-ACP_synth-2	UniProtKB/TrEMBL
	Beta-ketoacyl_synthase	UniProtKB/TrEMBL
	Ketoacyl_synth_AS	UniProtKB/TrEMBL
	Ketoacyl_synth_C	UniProtKB/TrEMBL
	Ketoacyl_synth_N	UniProtKB/TrEMBL
	PKS_Beta-ketoAc_synthase_dom	UniProtKB/TrEMBL
	Thiolase-like	UniProtKB/TrEMBL
NCBI Gene	Oxsm	ENTREZGENE
PANTHER	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR11712	UniProtKB/TrEMBL
Pfam	ketoacyl-synt	UniProtKB/TrEMBL
	Ketoacyl-synt_C	UniProtKB/TrEMBL
PIRSF	KAS_II	UniProtKB/TrEMBL
PROSITE	B_KETOACYL_SYNTHASE	UniProtKB/TrEMBL
	KS3_2	UniProtKB/TrEMBL
SMART	PKS_KS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53901	UniProtKB/TrEMBL
UniProt	A0A287DAM2_ICTTR	UniProtKB/TrEMBL
	I3M566	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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