Snap47 (synaptosome associated protein 47) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Snap47 (synaptosome associated protein 47) Ictidomys tridecemlineatus
Analyze
Symbol: Snap47
Name: synaptosome associated protein 47
RGD ID: 12604019
Description: ENCODES a protein that exhibits SNAP receptor activity (inferred); syntaxin binding (inferred); INVOLVED IN long-term synaptic potentiation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN asymmetric synapse (ortholog); BLOC-1 complex (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptosomal-associated protein 47; synaptosome associated protein 47, transcript variant X1; synaptosome associated protein 47, transcript variant X2; synaptosome associated protein 47, transcript variant X3; synaptosome associated protein 47, transcript variant X4; synaptosome associated protein 47, transcript variant X5; synaptosome associated protein 47, transcript variant X6; synaptosome associated protein 47, transcript variant X7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,971,982 - 88,036,305 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936864318,096 - 377,526 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936864313,650 - 381,553 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Snap47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,971,982 - 88,036,305 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936864318,096 - 377,526 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936864313,650 - 381,553 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,728,168 - 227,781,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,728,200 - 227,781,826 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,915,869 - 227,968,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,989,320 - 226,035,550 (+)NCBINCBI36Build 36hg18NCBI36
Celera1201,114,401 - 201,160,635 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,439,260 - 198,485,460 (+)NCBIHuRef
CHM1_11229,195,112 - 229,241,660 (+)NCBICHM1_1
T2T-CHM13v2.01226,917,102 - 226,970,160 (+)NCBIT2T-CHM13v2.0
Snap47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,297,967 - 59,340,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,297,960 - 59,342,012 (-)EnsemblGRCm39 Ensembl
GRCm381159,407,141 - 59,450,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,407,134 - 59,451,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,220,652 - 59,263,458 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,223,345 - 59,266,151 (-)NCBIMGSCv36mm8
MGSCv361159,945,158 - 59,986,056 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.7NCBI
Snap47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,692,430 - 44,733,986 (-)NCBIGRCr8
mRatBN7.21044,192,886 - 44,234,435 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,191,218 - 44,234,424 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,887,305 - 48,928,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,377,674 - 48,419,194 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,881,279 - 43,922,803 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,757,196 - 45,798,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,757,197 - 45,798,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,512,870 - 45,554,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,712,924 - 45,754,443 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,726,547 - 45,768,066 (-)NCBI
Celera1043,454,703 - 43,496,156 (-)NCBICelera
Cytogenetic Map10q22NCBI
Snap47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581491,526 - 525,223 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581486,087 - 525,171 (-)NCBIChiLan1.0ChiLan1.0
SNAP47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,824,943 - 21,877,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,765,651 - 21,818,237 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,128,827 - 203,181,521 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,108,638 - 208,161,139 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,115,118 - 208,161,139 (+)Ensemblpanpan1.1panPan2
SNAP47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,058,891 - 1,104,568 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,056,802 - 1,104,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14696,791 - 746,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014781,922 - 827,756 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14781,019 - 827,776 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114972,472 - 1,036,497 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014753,185 - 798,987 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014741,820 - 787,672 (-)NCBIUU_Cfam_GSD_1.0
SNAP47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1250,812,309 - 50,921,744 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2254,303,886 - 54,412,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,923,751 - 1,968,543 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,923,555 - 1,968,497 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,806,568 - 1,851,342 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snap47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937687,988 - 730,674 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937695,245 - 728,656 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000024994   ⟹   ENSSTOP00000023312
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936864318,096 - 377,526 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000042541   ⟹   ENSSTOP00000028704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936864318,096 - 360,687 (-)Ensembl
RefSeq Acc Id: XM_005341281   ⟹   XP_005341338
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,972,511 - 88,036,305 (-)NCBI
SpeTri2.0NW_004936864313,650 - 377,510 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720825   ⟹   XP_021576500
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,972,511 - 88,036,305 (-)NCBI
SpeTri2.0NW_004936864313,650 - 377,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720826   ⟹   XP_021576501
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,971,982 - 88,036,010 (-)NCBI
SpeTri2.0NW_004936864313,650 - 377,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720828   ⟹   XP_021576503
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,971,982 - 88,018,968 (-)NCBI
SpeTri2.0NW_004936864313,650 - 377,510 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040272659   ⟹   XP_040128593
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,971,982 - 88,029,026 (-)NCBI
RefSeq Acc Id: XM_040272660   ⟹   XP_040128594
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,972,511 - 88,036,305 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005341338   ⟸   XM_005341281
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576503   ⟸   XM_021720828
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576500   ⟸   XM_021720825
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576501   ⟸   XM_021720826
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128593   ⟸   XM_040272659
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128594   ⟸   XM_040272660
- UniProtKB: I3NG15 (UniProtKB/TrEMBL),   A0A287D599 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000028704   ⟸   ENSSTOT00000042541
RefSeq Acc Id: ENSSTOP00000023312   ⟸   ENSSTOT00000024994
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028391 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024994.2 UniProtKB/TrEMBL
  ENSSTOT00000042541.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene Snap47 ENTREZGENE
PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN UniProtKB/TrEMBL
  SYNAPTOSOMAL-ASSOCIATED PROTEIN 47 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A287D599 ENTREZGENE, UniProtKB/TrEMBL
  I3NG15 ENTREZGENE, UniProtKB/TrEMBL