Brinp2 (BMP/retinoic acid inducible neural specific 2) - Rat Genome Database

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Gene: Brinp2 (BMP/retinoic acid inducible neural specific 2) Ictidomys tridecemlineatus
Analyze
Symbol: Brinp2
Name: BMP/retinoic acid inducible neural specific 2
RGD ID: 12600675
Description: INVOLVED IN negative regulation of cell cycle (ortholog); nervous system development (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BMP/retinoic acid-inducible neural-specific protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,512,083 - 93,615,246 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,356,608 - 11,455,125 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,358,832 - 11,455,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
dendrite  (IEA,ISO)
neuronal cell body  (IEA,ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Brinp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,512,083 - 93,615,246 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,356,608 - 11,455,125 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,358,832 - 11,455,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRINP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381177,170,958 - 177,282,422 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1177,170,958 - 177,282,422 (+)EnsemblGRCh38hg38GRCh38
GRCh371177,140,094 - 177,251,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,407,256 - 175,518,181 (+)NCBINCBI36Build 36hg18NCBI36
Celera1150,250,704 - 150,361,628 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1148,367,642 - 148,478,577 (+)NCBIHuRef
CHM1_11178,564,624 - 178,675,569 (+)NCBICHM1_1
T2T-CHM13v2.01176,525,633 - 176,637,111 (+)NCBIT2T-CHM13v2.0
Brinp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,072,835 - 158,185,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,072,839 - 158,183,896 (-)EnsemblGRCm39 Ensembl
GRCm381158,245,265 - 158,356,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,245,269 - 158,356,326 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,175,400 - 160,286,391 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,081,948 - 160,193,003 (-)NCBIMGSCv36mm8
Celera1160,640,225 - 160,749,398 (-)NCBICelera
Cytogenetic Map1H1NCBI
cM Map168.27NCBI
Brinp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81372,964,498 - 73,065,312 (-)NCBIGRCr8
mRatBN7.21370,431,006 - 70,532,766 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1370,431,010 - 70,531,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1373,009,747 - 73,110,601 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01374,307,588 - 74,408,329 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01371,567,679 - 71,668,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01375,948,679 - 76,049,363 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1375,948,679 - 76,049,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01380,863,780 - 80,964,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41373,541,992 - 73,644,517 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11373,556,179 - 73,658,705 (-)NCBI
Celera1370,246,465 - 70,347,212 (-)NCBICelera
Cytogenetic Map13q22NCBI
Brinp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540616,748,824 - 16,844,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540616,748,824 - 16,840,924 (+)NCBIChiLan1.0ChiLan1.0
BRINP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2172,437,118 - 72,547,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1172,107,317 - 72,218,106 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,694,667 - 152,806,085 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,391,436 - 156,502,742 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,450,411 - 156,502,742 (+)Ensemblpanpan1.1panPan2
BRINP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1722,332,465 - 22,449,295 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl722,339,056 - 22,448,854 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha721,865,088 - 21,973,700 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0722,086,726 - 22,195,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl722,072,721 - 22,195,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1721,992,092 - 22,101,532 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0722,092,409 - 22,201,467 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0722,235,542 - 22,344,318 (-)NCBIUU_Cfam_GSD_1.0
BRINP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9118,975,719 - 119,095,336 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19118,967,670 - 119,095,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29130,733,801 - 130,820,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BRINP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12551,993,095 - 52,114,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2551,993,135 - 52,105,212 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605553,564,202 - 53,676,022 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brinp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247714,924,750 - 4,972,097 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247714,926,187 - 5,021,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011896   ⟹   ENSSTOP00000010668
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648111,356,608 - 11,455,125 (-)Ensembl
RefSeq Acc Id: XM_005319769   ⟹   XP_005319826
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,512,083 - 93,608,387 (-)NCBI
SpeTri2.0NW_00493648111,358,832 - 11,455,104 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040278095   ⟹   XP_040134029
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,512,087 - 93,615,237 (-)NCBI
RefSeq Acc Id: XM_040278096   ⟹   XP_040134030
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,512,087 - 93,615,246 (-)NCBI
RefSeq Acc Id: XM_040278097   ⟹   XP_040134031
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,512,087 - 93,555,477 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005319826 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134029 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134030 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134031 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010668.2
GenBank Protein KAG3258666 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005319826   ⟸   XM_005319769
- Peptide Label: isoform X1
- UniProtKB: I3MI64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040134030   ⟸   XM_040278096
- Peptide Label: isoform X1
- UniProtKB: I3MI64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134029   ⟸   XM_040278095
- Peptide Label: isoform X1
- UniProtKB: I3MI64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134031   ⟸   XM_040278097
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000010668   ⟸   ENSSTOT00000011896
Protein Domains
MACPF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011896 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011896.3 UniProtKB/TrEMBL
InterPro BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
NCBI Gene Brinp2 ENTREZGENE
PANTHER BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 2 UniProtKB/TrEMBL
  PTHR15564 UniProtKB/TrEMBL
Pfam BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
SMART MACPF UniProtKB/TrEMBL
UniProt I3MI64 ENTREZGENE, UniProtKB/TrEMBL