Znf711 (zinc finger protein 711) - Rat Genome Database

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Gene: Znf711 (zinc finger protein 711) Ictidomys tridecemlineatus
Analyze
Symbol: Znf711
Name: zinc finger protein 711
RGD ID: 12592530
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365475,999,739 - 6,026,769 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365475,999,792 - 6,026,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Znf711
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365475,999,739 - 6,026,769 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365475,999,792 - 6,026,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF711
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X85,243,991 - 85,273,357 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX85,243,991 - 85,273,362 (+)EnsemblGRCh38hg38GRCh38
GRCh37X84,498,997 - 84,528,363 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X84,385,653 - 84,415,024 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X84,305,235 - 84,333,072NCBI
CeleraX84,738,361 - 84,767,732 (+)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX78,072,499 - 78,101,368 (+)NCBIHuRef
CHM1_1X84,392,701 - 84,421,999 (+)NCBICHM1_1
T2T-CHM13v2.0X83,672,840 - 83,701,879 (+)NCBIT2T-CHM13v2.0
Zfp711
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X111,510,259 - 111,544,767 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX111,510,223 - 111,544,767 (+)EnsemblGRCm39 Ensembl
GRCm38X112,600,526 - 112,635,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX112,600,526 - 112,635,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X109,714,135 - 109,748,671 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X108,717,470 - 108,743,017 (+)NCBIMGSCv36mm8
CeleraX99,225,536 - 99,256,329 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX48.76NCBI
Zfp711
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X81,838,483 - 81,871,767 (+)NCBIGRCr8
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX77,646,558 - 77,678,045 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX79,304,379 - 79,337,338 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X82,734,477 - 82,767,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X80,322,903 - 80,355,831 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX84,064,427 - 84,096,617 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X84,011,437 - 84,045,090 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X101,187,139 - 101,215,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX78,946,332 - 78,979,432 (+)NCBICelera
Cytogenetic MapXq31NCBI
Znf711
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555294,111,128 - 4,136,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555294,108,202 - 4,134,696 (+)NCBIChiLan1.0ChiLan1.0
ZNF711
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X84,721,086 - 84,750,712 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X84,724,693 - 84,754,319 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X74,314,161 - 74,343,246 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X84,424,414 - 84,453,640 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX84,424,414 - 84,453,640 (+)Ensemblpanpan1.1panPan2
ZNF711
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X66,203,972 - 66,229,171 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX66,203,463 - 66,227,641 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX56,961,170 - 56,986,414 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X67,535,617 - 67,560,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX67,535,680 - 67,560,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X65,183,316 - 65,208,559 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X66,820,121 - 66,845,363 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X66,412,311 - 66,437,559 (+)NCBIUU_Cfam_GSD_1.0
ZNF711
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX68,475,636 - 68,499,321 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X68,475,512 - 68,499,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X78,275,335 - 78,322,084 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF711
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X74,093,028 - 74,121,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX74,094,789 - 74,122,024 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660676,715,412 - 6,744,125 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf711
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248523,138,699 - 3,159,501 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248523,137,206 - 3,163,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008910   ⟹   ENSSTOP00000007983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365476,003,501 - 6,025,188 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000030250   ⟹   ENSSTOP00000028238
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365475,999,739 - 6,026,769 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000037162   ⟹   ENSSTOP00000024233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365476,002,845 - 6,026,769 (+)Ensembl
RefSeq Acc Id: XM_021728768   ⟹   XP_021584443
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,320 - 59,706,282 (+)NCBI
SpeTri2.0NW_0049365475,999,796 - 6,026,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728772   ⟹   XP_021584447
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,314 - 59,706,282 (+)NCBI
SpeTri2.0NW_0049365475,999,792 - 6,026,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040282752   ⟹   XP_040138686
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282756   ⟹   XP_040138690
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,680,427 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282759   ⟹   XP_040138693
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282762   ⟹   XP_040138696
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282765   ⟹   XP_040138699
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,312 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282773   ⟹   XP_040138707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,314 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282777   ⟹   XP_040138711
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,314 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282778   ⟹   XP_040138712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,314 - 59,706,282 (+)NCBI
RefSeq Acc Id: XM_040282782   ⟹   XP_040138716
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,679,317 - 59,706,282 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021584447   ⟸   XM_021728772
- Peptide Label: isoform X2
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584443   ⟸   XM_021728768
- Peptide Label: isoform X4
- UniProtKB: A0A287CSI7 (UniProtKB/TrEMBL),   I3MCJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040138693   ⟸   XM_040282759
- Peptide Label: isoform X1
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138686   ⟸   XM_040282752
- Peptide Label: isoform X1
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138696   ⟸   XM_040282762
- Peptide Label: isoform X1
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138699   ⟸   XM_040282765
- Peptide Label: isoform X1
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138707   ⟸   XM_040282773
- Peptide Label: isoform X2
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138711   ⟸   XM_040282777
- Peptide Label: isoform X2
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138712   ⟸   XM_040282778
- Peptide Label: isoform X2
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138716   ⟸   XM_040282782
- Peptide Label: isoform X3
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138690   ⟸   XM_040282756
- Peptide Label: isoform X1
- UniProtKB: I3MCJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007983   ⟸   ENSSTOT00000008910
RefSeq Acc Id: ENSSTOP00000024233   ⟸   ENSSTOT00000037162
RefSeq Acc Id: ENSSTOP00000028238   ⟸   ENSSTOT00000030250
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008918 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008910.3 UniProtKB/TrEMBL
  ENSSTOT00000030250.1 UniProtKB/TrEMBL
  ENSSTOT00000037162.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Transcrp_activ_Zfx/Zfy-dom UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf711 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN X-LINKED UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  Zfx_Zfy_act UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A287CSI7 ENTREZGENE, UniProtKB/TrEMBL
  I3MCJ3 ENTREZGENE, UniProtKB/TrEMBL