Fgf11 (fibroblast growth factor 11) - Rat Genome Database

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Gene: Fgf11 (fibroblast growth factor 11) Ictidomys tridecemlineatus
Analyze
Symbol: Fgf11
Name: fibroblast growth factor 11
RGD ID: 12582100
Description: ENCODES a protein that exhibits growth factor activity (inferred); sodium channel regulator activity (inferred); INVOLVED IN signal transduction (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibroblast growth factor 11, transcript variant X1; fibroblast growth factor 11, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,247,083 - 47,253,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595721,333 - 727,845 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595721,295 - 727,845 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fgf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,247,083 - 47,253,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595721,333 - 727,845 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595721,295 - 727,845 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,438,298 - 7,444,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,438,273 - 7,444,937 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,341,617 - 7,348,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,283,413 - 7,288,975 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,283,412 - 7,288,973NCBI
Celera177,368,577 - 7,374,139 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,236,633 - 7,242,196 (+)NCBIHuRef
CHM1_1177,351,783 - 7,357,349 (+)NCBICHM1_1
T2T-CHM13v2.0177,342,353 - 7,348,996 (+)NCBIT2T-CHM13v2.0
Fgf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,686,894 - 69,693,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,686,894 - 69,692,683 (-)EnsemblGRCm39 Ensembl
GRCm381169,796,068 - 69,802,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,796,068 - 69,801,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,611,704 - 69,615,127 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,614,397 - 69,617,820 (-)NCBIMGSCv36mm8
MGSCv361170,382,309 - 70,385,732 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.88NCBI
Fgf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,015,232 - 55,020,773 (-)NCBIGRCr8
mRatBN7.21054,516,508 - 54,522,067 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,517,077 - 54,522,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,181,104 - 59,184,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,669,672 - 58,673,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,177,325 - 54,180,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,403,320 - 56,410,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,403,256 - 56,409,017 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,150,464 - 56,153,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,619,650 - 56,622,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,633,272 - 56,636,595 (-)NCBI
Celera1053,672,872 - 53,676,194 (-)NCBICelera
Cytogenetic Map10q24NCBI
Fgf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,482,467 - 9,488,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,482,467 - 9,488,992 (-)NCBIChiLan1.0ChiLan1.0
FGF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,035,065 - 15,041,731 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,002,058 - 17,007,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,472,262 - 7,478,927 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,460,995 - 7,465,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,459,880 - 7,465,105 (+)Ensemblpanpan1.1panPan2
FGF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,368,380 - 32,375,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,369,831 - 32,373,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,506,201 - 32,513,135 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,473,777 - 32,480,720 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,475,515 - 32,480,715 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,439,009 - 32,445,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,397,737 - 32,404,667 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,575,007 - 32,581,943 (+)NCBIUU_Cfam_GSD_1.0
FGF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,742,131 - 52,748,487 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,742,090 - 52,749,331 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,003,942 - 55,010,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,814,392 - 6,821,727 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,818,208 - 6,821,721 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,586,674 - 14,592,596 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,050,002 - 10,056,390 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,049,954 - 10,056,376 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000338   ⟹   ENSSTOP00000000302
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936595721,333 - 727,845 (+)Ensembl
RefSeq Acc Id: XM_005332793   ⟹   XP_005332850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560247,247,088 - 47,253,657 (+)NCBI
SpeTri2.0NW_004936595721,297 - 727,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013361765   ⟹   XP_013217219
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560247,247,083 - 47,253,657 (+)NCBI
SpeTri2.0NW_004936595721,295 - 727,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269364   ⟹   XP_040125298
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560247,247,087 - 47,253,657 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005332850 (Get FASTA)   NCBI Sequence Viewer  
  XP_013217219 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000302.2
GenBank Protein KAG3269866 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269867 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013217219   ⟸   XM_013361765
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005332850   ⟸   XM_005332793
- Peptide Label: isoform X1
- UniProtKB: I3LWF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125298   ⟸   XM_040269364
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000000302   ⟸   ENSSTOT00000000338


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000339 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000338.3 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
NCBI Gene Fgf11 ENTREZGENE
PANTHER PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF67 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
UniProt I3LWF1 ENTREZGENE, UniProtKB/TrEMBL