Rnf144a (ring finger protein 144A) - Rat Genome Database

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Gene: Rnf144a (ring finger protein 144A) Ictidomys tridecemlineatus
Analyze
Symbol: Rnf144a
Name: ring finger protein 144A
RGD ID: 12577948
Description: ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin conjugating enzyme binding (inferred); INVOLVED IN pattern recognition receptor signaling pathway (inferred); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (inferred); protein K6-linked ubiquitination (inferred); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF144A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629249,214,083 - 49,291,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365323,969,081 - 4,046,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365323,969,108 - 4,047,022 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf144a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629249,214,083 - 49,291,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365323,969,081 - 4,046,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365323,969,108 - 4,047,022 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF144A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3826,917,412 - 7,076,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl26,917,412 - 7,068,286 (+)EnsemblGRCh38hg38GRCh38
GRCh3727,057,543 - 7,216,498 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3626,974,974 - 7,101,761 (+)NCBINCBI36Build 36hg18NCBI36
Build 3427,008,120 - 7,134,905NCBI
Celera26,970,459 - 7,097,185 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef26,905,236 - 7,031,868 (+)NCBIHuRef
CHM1_126,987,069 - 7,113,867 (+)NCBICHM1_1
T2T-CHM13v2.026,938,911 - 7,097,926 (+)NCBIT2T-CHM13v2.0
Rnf144a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391226,356,796 - 26,465,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1226,350,963 - 26,465,253 (-)EnsemblGRCm39 Ensembl
GRCm381226,306,794 - 26,415,319 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1226,300,964 - 26,415,254 (-)EnsemblGRCm38mm10GRCm38
MGSCv371226,991,662 - 27,100,121 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361226,893,333 - 27,001,492 (-)NCBIMGSCv36mm8
Celera1227,760,134 - 27,872,471 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map129.69NCBI
Rnf144a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8648,628,241 - 48,748,241 (-)NCBIGRCr8
mRatBN7.2642,899,767 - 43,019,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl642,903,174 - 43,020,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx643,216,220 - 43,332,494 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0643,531,071 - 43,647,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0642,964,211 - 43,080,486 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0645,509,895 - 45,629,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl645,509,787 - 45,629,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0654,230,883 - 54,349,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4643,957,013 - 44,073,940 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera642,171,119 - 42,286,715 (-)NCBICelera
Cytogenetic Map6q16NCBI
Rnf144a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554871,883,835 - 1,966,469 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554871,884,179 - 1,985,559 (-)NCBIChiLan1.0ChiLan1.0
RNF144A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212119,269,918 - 119,594,714 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A119,273,888 - 119,598,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A6,925,266 - 7,082,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A7,077,423 - 7,217,075 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A7,085,369 - 7,184,838 (+)Ensemblpanpan1.1panPan2
RNF144A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1174,522,095 - 4,637,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl174,519,904 - 4,662,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,447,819 - 4,563,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,624,713 - 4,740,118 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,623,196 - 4,765,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,511,901 - 4,627,747 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,520,392 - 4,636,541 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,534,579 - 4,650,279 (+)NCBIUU_Cfam_GSD_1.0
RNF144A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3128,747,722 - 128,817,537 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13128,746,910 - 128,868,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23137,582,250 - 137,782,231 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF144A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114100,646,376 - 100,765,860 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14100,644,270 - 100,743,634 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604511,576,349 - 11,732,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf144a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248463,300,960 - 3,378,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248463,297,444 - 3,393,473 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027240   ⟹   ENSSTOP00000023804
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365323,969,081 - 4,046,976 (+)Ensembl
RefSeq Acc Id: XM_005327344   ⟹   XP_005327401
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629249,214,083 - 49,291,927 (+)NCBI
SpeTri2.0NW_0049365323,969,108 - 4,047,022 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271218   ⟹   XP_040127152
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629249,254,141 - 49,291,927 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005327401 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127152 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023804.1
GenBank Protein KAG3267538 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005327401   ⟸   XM_005327344
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040127152   ⟸   XM_040271218
- Peptide Label: isoform X2
- UniProtKB: I3NHF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000023804   ⟸   ENSSTOT00000027240
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027570 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027240.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro E3_UB_ligase_RBR UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Rnf144a ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF144A UniProtKB/TrEMBL
  PTHR11685 UniProtKB/TrEMBL
Pfam IBR UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt I3NHF7 ENTREZGENE, UniProtKB/TrEMBL