Iqub (IQ motif and ubiquitin domain containing) - Rat Genome Database

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Pathways
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Gene: Iqub (IQ motif and ubiquitin domain containing) Ictidomys tridecemlineatus
Analyze
Symbol: Iqub
Name: IQ motif and ubiquitin domain containing
RGD ID: 12573717
Description: INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN 9+2 motile cilium (inferred); acrosomal vesicle (inferred); motile cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,197,995 - 50,256,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,947,685 - 2,005,322 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,947,685 - 2,005,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Iqub
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,197,995 - 50,256,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,947,685 - 2,005,322 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,947,685 - 2,005,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQUB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387123,452,193 - 123,534,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7123,452,193 - 123,535,077 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,092,247 - 123,174,649 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367122,879,950 - 122,961,874 (-)NCBINCBI36Build 36hg18NCBI36
Celera7117,895,964 - 117,978,456 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7117,455,121 - 117,537,521 (-)NCBIHuRef
CHM1_17123,025,529 - 123,108,008 (-)NCBICHM1_1
T2T-CHM13v2.07124,768,955 - 124,851,361 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27122,480,849 - 122,563,331 (-)NCBI
Iqub
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,444,864 - 24,515,066 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,444,864 - 24,515,066 (-)EnsemblGRCm39 Ensembl
GRCm38624,444,865 - 24,515,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,444,865 - 24,515,067 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,394,865 - 24,465,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,394,870 - 24,465,066 (-)NCBIMGSCv36mm8
Celera624,464,124 - 24,526,780 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.28NCBI
Iqub
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,897,336 - 53,962,279 (-)NCBIGRCr8
mRatBN7.2452,931,768 - 52,993,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl452,931,767 - 52,993,834 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx457,918,632 - 57,980,632 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,824,820 - 53,887,443 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,260,064 - 52,322,020 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,482,169 - 51,586,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,482,170 - 51,586,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0451,258,450 - 51,365,137 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4450,903,801 - 50,948,991 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera448,100,673 - 48,159,583 (-)NCBICelera
Cytogenetic Map4q22NCBI
Iqub
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554794,988,438 - 5,059,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554794,988,718 - 5,059,800 (-)NCBIChiLan1.0ChiLan1.0
IQUB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,320,231 - 160,403,318 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,328,669 - 12,413,008 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07115,458,031 - 115,541,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,142,106 - 128,223,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,142,106 - 128,223,780 (-)Ensemblpanpan1.1panPan2
IQUB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11460,909,581 - 60,965,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1460,886,407 - 60,964,382 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1460,330,419 - 60,385,705 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01460,950,160 - 60,997,621 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11461,039,311 - 61,094,612 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01460,669,280 - 60,724,585 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01461,045,467 - 61,100,796 (-)NCBIUU_Cfam_GSD_1.0
IQUB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,902,980 - 24,014,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,902,954 - 24,014,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,499,935 - 25,608,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IQUB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,249,281 - 92,324,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,246,222 - 92,324,722 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604211,140,954 - 11,221,990 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iqub
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478312,454,710 - 12,510,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478312,442,288 - 12,509,647 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000008078   ⟹   ENSSTOP00000007233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366051,947,685 - 2,005,322 (+)Ensembl
RefSeq Acc Id: XM_005333956   ⟹   XP_005334013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511850,197,995 - 50,256,245 (-)NCBI
SpeTri2.0NW_0049366051,947,685 - 2,005,322 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334013 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007233.2
GenBank Protein KAG3277723 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005334013   ⟸   XM_005333956
- UniProtKB: I3MAZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000007233   ⟸   ENSSTOT00000008078
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008080 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008078.2 UniProtKB/TrEMBL
InterPro IQUB UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Iqub ENTREZGENE
PANTHER IQ AND UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR21074 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt I3MAZ5 ENTREZGENE, UniProtKB/TrEMBL