Mlycd (malonyl-CoA decarboxylase) - Rat Genome Database

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Gene: Mlycd (malonyl-CoA decarboxylase) Ictidomys tridecemlineatus
Analyze
Symbol: Mlycd
Name: malonyl-CoA decarboxylase
RGD ID: 12569093
Description: ENCODES a protein that exhibits identical protein binding (ortholog); malonyl-CoA decarboxylase activity (ortholog); INVOLVED IN acetyl-CoA biosynthetic process (ortholog); fatty acid biosynthetic process (ortholog); fatty acid oxidation (ortholog); PARTICIPATES IN malonic aciduria pathway; methylmalonic aciduria, cobalamin-related pathway; propanoate metabolic pathway; ASSOCIATED WITH Cardiac Fibrosis (ortholog); cardiomyopathy (ortholog); Cardiotoxicity (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: malonyl-CoA decarboxylase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934928,082,871 - 28,110,598 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,836,418 - 3,846,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mlycd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934928,082,871 - 28,110,598 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,836,418 - 3,846,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MLYCD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381683,899,115 - 83,927,031 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1683,899,115 - 83,951,445 (+)EnsemblGRCh38hg38GRCh38
GRCh371683,932,720 - 83,960,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361682,490,231 - 82,507,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 341682,490,272 - 82,507,277NCBI
Celera1668,233,776 - 68,250,834 (+)NCBICelera
Cytogenetic Map16q23.3NCBI
HuRef1669,684,307 - 69,701,406 (+)NCBIHuRef
CHM1_11685,344,095 - 85,361,152 (+)NCBICHM1_1
T2T-CHM13v2.01689,964,788 - 89,992,706 (+)NCBIT2T-CHM13v2.0
Mlycd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,121,591 - 120,148,577 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,121,617 - 120,137,841 (+)EnsemblGRCm39 Ensembl
GRCm388119,394,852 - 119,421,838 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,394,878 - 119,411,102 (+)EnsemblGRCm38mm10GRCm38
MGSCv378121,918,792 - 121,934,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,280,869 - 122,297,065 (+)NCBIMGSCv36mm8
MGSCv364123,800,115 - 123,816,910 (+)NCBIMGSCv36mm8
Celera8123,611,072 - 123,627,694 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map867.64NCBI
Mlycd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81964,356,582 - 64,372,447 (+)NCBIGRCr8
mRatBN7.21947,447,931 - 47,463,794 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1947,447,970 - 47,463,793 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,242,309 - 54,258,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01954,922,657 - 54,938,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,137,162 - 57,153,264 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,032,950 - 52,048,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1952,032,886 - 52,048,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01962,781,490 - 62,797,313 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41949,637,193 - 49,653,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11949,642,073 - 49,657,896 (+)NCBI
Celera1946,707,681 - 46,723,504 (+)NCBICelera
Cytogenetic Map19q12NCBI
MLYCD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21893,643,962 - 93,661,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11699,562,880 - 99,579,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01664,520,860 - 64,537,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11683,912,793 - 83,929,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1683,912,793 - 83,929,162 (+)Ensemblpanpan1.1panPan2
MLYCD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1568,385,058 - 68,399,965 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl568,384,618 - 68,399,965 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha568,398,888 - 68,413,778 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0568,683,230 - 68,698,120 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl568,683,230 - 68,698,120 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1568,631,023 - 68,645,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0568,467,455 - 68,482,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0568,883,325 - 68,898,237 (-)NCBIUU_Cfam_GSD_1.0
MLYCD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,681,664 - 4,698,661 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,683,386 - 4,698,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MLYCD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,312,978 - 69,329,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl569,313,062 - 69,329,102 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660476,492,522 - 6,508,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mlycd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,604,773 - 3,619,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,604,773 - 3,619,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040279018   ⟹   XP_040134952
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934928,082,871 - 28,110,598 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134952 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3256772 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040134952   ⟸   XM_040279018


Additional Information

Database Acc Id Source(s)
NCBI Gene Mlycd ENTREZGENE