Psmb6 (proteasome 20S subunit beta 6) - Rat Genome Database

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Gene: Psmb6 (proteasome 20S subunit beta 6) Ictidomys tridecemlineatus
Analyze
Symbol: Psmb6
Name: proteasome 20S subunit beta 6
RGD ID: 12567637
Description: ENCODES a protein that exhibits threonine-type endopeptidase activity (inferred); INVOLVED IN proteolysis involved in protein catabolic process (inferred); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit beta 6; proteasome subunit beta type-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,005,091 - 53,007,195 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,893,737 - 2,896,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,893,780 - 2,895,870 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Psmb6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,005,091 - 53,007,195 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,893,737 - 2,896,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,893,780 - 2,895,870 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,796,164 - 4,798,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,796,144 - 4,798,502 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,699,459 - 4,701,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,646,415 - 4,648,748 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,646,414 - 4,648,746NCBI
Celera174,714,866 - 4,717,199 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,587,894 - 4,590,253 (+)NCBIHuRef
CHM1_1174,708,411 - 4,710,770 (+)NCBICHM1_1
T2T-CHM13v2.0174,686,019 - 4,688,350 (+)NCBIT2T-CHM13v2.0
Psmb6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,416,116 - 70,418,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,416,193 - 70,418,684 (+)EnsemblGRCm39 Ensembl
GRCm381170,525,324 - 70,527,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,525,367 - 70,527,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,338,859 - 70,341,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,341,595 - 70,343,844 (+)NCBIMGSCv36mm8
Celera1178,073,676 - 78,076,176 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Psmb6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,737,852 - 55,740,218 (+)NCBIGRCr8
mRatBN7.21055,239,256 - 55,241,586 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,239,241 - 55,241,586 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,919,232 - 59,921,558 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,407,737 - 59,410,063 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,906,829 - 54,909,155 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,131,339 - 57,133,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,131,386 - 57,133,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,888,972 - 56,891,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,370,397 - 57,372,704 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,384,019 - 57,386,327 (+)NCBI
Celera1054,385,536 - 54,387,843 (+)NCBICelera
Cytogenetic Map10q24NCBI
Psmb6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,220,285 - 10,222,659 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,220,435 - 10,222,470 (+)NCBIChiLan1.0ChiLan1.0
PSMB6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,404,642 - 12,407,141 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,373,150 - 14,375,487 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,842,978 - 4,845,321 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,832,225 - 4,834,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,831,981 - 4,834,549 (+)Ensemblpanpan1.1panPan2
PSMB6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,776,286 - 31,778,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,776,293 - 31,778,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,915,750 - 31,918,255 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,881,502 - 31,884,007 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,881,509 - 31,883,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,847,683 - 31,850,185 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,807,355 - 31,809,858 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,983,746 - 31,986,251 (-)NCBIUU_Cfam_GSD_1.0
PSMB6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,096,009 - 52,098,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,317,056 - 54,319,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap12q13NCBI
PSMB6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,272,009 - 4,274,451 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,272,081 - 4,274,555 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,363,157 - 17,365,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,679,275 - 8,681,773 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,679,442 - 8,681,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000014876   ⟹   ENSSTOP00000013327
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366772,893,737 - 2,896,380 (-)Ensembl
RefSeq Acc Id: XM_005337366   ⟹   XP_005337423
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,005,091 - 53,007,195 (+)NCBI
SpeTri2.0NW_0049366772,893,780 - 2,895,870 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013327.2
  ENSSTOP00000029537.1
GenBank Protein KAG3270043 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005337423   ⟸   XM_005337366
- UniProtKB: I3MNQ9 (UniProtKB/TrEMBL),   A0A287D7I5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013327   ⟸   ENSSTOT00000014876


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014871 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000029495 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014876.3 UniProtKB/TrEMBL
  ENSSTOT00000034263.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/TrEMBL
NCBI Gene Psmb6 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
PRINTS PROTEASOME UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A287D7I5 ENTREZGENE, UniProtKB/TrEMBL
  I3MNQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psmb6  proteasome 20S subunit beta 6  Psmb6  proteasome subunit beta 6  Symbol and/or name change 5135510 APPROVED