Rida (reactive intermediate imine deaminase A homolog)

Gene: Rida (reactive intermediate imine deaminase A homolog) Ictidomys tridecemlineatus

Analyze

Symbol:

Rida

Name:

reactive intermediate imine deaminase A homolog

RGD ID:

12565379

Description:

ENCODES a protein that exhibits 2-iminobutanoate deaminase activity (ortholog); cation binding (ortholog); identical protein binding (ortholog); INVOLVED IN G1 to G0 transition (ortholog); kidney development (ortholog); lung development (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Experimental Liver Cirrhosis (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); peroxisome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

2-iminobutanoate/2-iminopropanoate deaminase; ribonuclease UK114

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	37,284,388 - 37,295,076 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936470	44,710,481 - 44,721,159 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Liver Failure (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Liver Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G1 to G0 transition (ISO)

kidney development (ISO)

lipid metabolic process (IEA)

lung development (ISO)

mRNA catabolic process (ISO)

mRNA destabilization (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of translation (ISO)

response to lipid (ISO)

response to salt (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

mitochondrial matrix (ISO)

mitochondrion (IEA)

nucleus (IEA)

peroxisome (IEA,ISO)

Molecular Function

2-iminobutanoate deaminase activity (ISO)

2-iminobutanoate/2-iminopropanoate deaminase (IEA)

cation binding (ISO)

deaminase activity (IEA)

identical protein binding (ISO)

long-chain fatty acid binding (ISO)

mRNA binding (ISO)

protein binding (ISO)

RNA binding (IEA)

RNA endonuclease activity, producing 3'-phosphomonoesters (ISO)

transition metal ion binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rida
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	37,284,388 - 37,295,076 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936470	44,710,481 - 44,721,159 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIDA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	98,102,344 - 98,117,171 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	98,102,344 - 98,117,171 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	99,114,572 - 99,129,399 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	99,183,743 - 99,198,594 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	99,183,742 - 99,198,594	NCBI
Celera	8	95,300,431 - 95,315,280 (-)	NCBI		Celera
Cytogenetic Map	8	q22.2	NCBI
HuRef	8	94,318,228 - 94,332,987 (-)	NCBI		HuRef
CHM1_1	8	99,155,322 - 99,170,170 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	99,227,836 - 99,242,661 (-)	NCBI		T2T-CHM13v2.0

Rida
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	34,484,168 - 34,495,392 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	34,484,167 - 34,495,401 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	34,484,022 - 34,495,246 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	34,484,021 - 34,495,255 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	34,413,777 - 34,425,001 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	34,428,726 - 34,439,779 (-)	NCBI		MGSCv36	mm8
Celera	15	35,111,842 - 35,123,094 (-)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI
cM Map	15	14.34	NCBI

Rida
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	67,576,586 - 67,590,493 (-)	NCBI		GRCr8
mRatBN7.2	7	65,691,429 - 65,705,257 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	65,691,435 - 65,705,716 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	67,580,616 - 67,594,441 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	69,782,349 - 69,796,174 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	69,647,777 - 69,661,588 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	73,256,506 - 73,270,308 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	73,256,508 - 73,270,308 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	73,422,772 - 73,436,372 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	69,930,464 - 69,944,267 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	69,951,193 - 69,964,994 (-)	NCBI
Celera	7	62,792,438 - 62,806,237 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

Rida
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	13,810,596 - 13,822,982 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	13,810,596 - 13,822,982 (-)	NCBI	ChiLan1.0	ChiLan1.0

RIDA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	115,443,968 - 115,458,801 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	90,985,381 - 91,000,244 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	94,739,120 - 94,753,934 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	96,923,776 - 96,938,512 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	96,923,776 - 96,938,512 (-)	Ensembl	panpan1.1		panPan2

RIDA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	348,744 - 361,063 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	348,860 - 361,522 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	342,375 - 354,474 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	497,322 - 509,637 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	497,438 - 509,539 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	340,907 - 353,035 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	448,689 - 460,999 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	454,739 - 467,052 (-)	NCBI		UU_Cfam_GSD_1.0

RIDA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	38,656,319 - 38,670,987 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	38,656,270 - 38,665,863 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	41,808,015 - 41,817,605 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIDA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	93,014,986 - 93,031,499 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666039	47,707,238 - 47,724,168 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rida
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	5,247,715 - 5,263,880 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	5,249,905 - 5,263,994 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005316313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005316313 ⟹ XP_005316370

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	37,284,388 - 37,295,076 (+)	NCBI
SpeTri2.0	NW_004936470	44,710,481 - 44,721,159 (+)	NCBI

Sequence:

show sequence

AGCGAGCGCGCTCCCCGGGTCCCTCCGGCAGGCGCTGCCCCAGGCTGGTCAGTTGTTGGGCGAG
AATCGGGCAGGGCTGGTGAAGGGGCATCTTCTCCCGGAGGGGCTTAAGAAAGAAGACTGAAATG
TCGTCATTGATCAGAAAGGTGATCAGCACCGCGAAAGCCCCAGGGGCCATTGGTCCCTACAGTC
AAGCAGTGTTAGTGGACAAGACCGTTTACATCTCTGGACAGATAGGCATGGACCCTTCCAGTGG
ACAGCTTGTACCTGGAGGGATAGCAGCAGAAACTAAACAAGCTCTTACAAACATGGGTGAAATT
CTGAAAGCGGCAGGCTGTGACTTCACTAATGTGGTCAAAGCAACTGTTTTGCTGGCTGACATGA
ATGACTTCAATACTGTCAATGAAATCTACAAACAGTATTTCAAGAGTAATTTTCCTGCTAGAGC
TGCTTACCAGGTTGCTGCTTTACCCAAAGGAGCACGCATTGAGATTGAAGCAGTGGCTGTCCAG
GGACCTCTCACAACAGCAGGTCTATAAGTAGGCAGTGTTATTCTCATCATGTCTTTAAATTAAC
ATTTTGATTCTTACAATTGATGTTGAAAGTGTACATGTGACTAAAATATCTGTAGTTATCATGG
AAATACCATATCATAGAGGGAGTTGACATGAATTGAATATTAGATAATGAATCCAGTTACTGAT
GCTACAAATTACAAATGTGTACACTCATTGCTGAATATGGGAGAAGGGACACTCATTACATAGT
CACTCAAGTAAACTAAAGTACAAGGAATAATAACACAGGTAGATGAGTTAATGTTCCTGAAAAA
TAATAAAGAGCCTAATTCAATTACATTCTATTTAATTAAACGATATGAAGTATTTAGTTCTCAT
GTTAGATATGTGATTCTGCTTTTACTTTAGTAAAATATTCACTCTTGAATTGTAGAAGTAAAGA
AGAAAATGGACCAAAATTTTATATAGATAATATTTTTCTAATGGAAATAAAATACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005316370	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010276.3
	ENSSTOP00000032619.1
GenBank Protein	KAG3273851	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005316370 ⟸ XM_005316313
- UniProtKB:	I3MHC8 (UniProtKB/TrEMBL), A0A287DGF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLIRKVISTAKAPGAIGPYSQAVLVDKTVYISGQIGMDPSSGQLVPGGIAAETKQALTNMGE ILKAAGCDFTNVVKATVLLADMNDFNTVNEIYKQYFKSNFPARAAYQVAALPKGARIEIEAVAV QGPLTTAGL hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011452	UniProtKB/TrEMBL
	ENSSTOG00000034265	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011451.3	UniProtKB/TrEMBL
	ENSSTOT00000036359.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1330.40	UniProtKB/TrEMBL
InterPro	RidA	UniProtKB/TrEMBL
	RidA_CS	UniProtKB/TrEMBL
	RutC-like_sf	UniProtKB/TrEMBL
	YjgF/YER057c/UK114	UniProtKB/TrEMBL
NCBI Gene	Rida	ENTREZGENE
PANTHER	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE	UniProtKB/TrEMBL
	PTHR11803	UniProtKB/TrEMBL
Pfam	Ribonuc_L-PSP	UniProtKB/TrEMBL
PROSITE	UPF0076	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55298	UniProtKB/TrEMBL
UniProt	A0A287DGF0	ENTREZGENE, UniProtKB/TrEMBL
	I3MHC8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD