LOC101976326 (cytochrome c, somatic-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101976326 (cytochrome c, somatic-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976326
Name: cytochrome c, somatic-like
RGD ID: 12561646
Description: ENCODES a protein that exhibits electron transfer activity (inferred); heme binding (inferred); metal ion binding (inferred); INVOLVED IN apoptotic process (inferred); mitochondrial electron transport, cytochrome c to oxygen (inferred); mitochondrial electron transport, ubiquinol to cytochrome c (inferred); FOUND IN mitochondrial intermembrane space (inferred); mitochondrion (inferred); respirasome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome c, somatic pseudogene
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X86,191,512 - 86,201,227 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364991,456,765 - 1,466,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040282441   ⟹   XP_040138375
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X86,191,512 - 86,201,227 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040138375 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016919.1
GenBank Protein KAG3272759 (Get FASTA)   NCBI Sequence Viewer  
  KAG3272760 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138375   ⟸   XM_040282441
- UniProtKB: I3MXS4 (UniProtKB/TrEMBL)
Protein Domains
Cytochrome c


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000807 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000804.2 UniProtKB/TrEMBL
Gene3D-CATH Cytochrome c-like domain UniProtKB/TrEMBL
InterPro Cyt_c-like_dom UniProtKB/TrEMBL
  Cyt_c-like_dom_sf UniProtKB/TrEMBL
  Cyt_c_1A/1B UniProtKB/TrEMBL
NCBI Gene LOC101976326 ENTREZGENE
PANTHER CYTOCHROME C UniProtKB/TrEMBL
  CYTOCHROME C, SOMATIC UniProtKB/TrEMBL
Pfam Cytochrom_C UniProtKB/TrEMBL
PRINTS CYTCHRMECIAB UniProtKB/TrEMBL
PROSITE CYTC UniProtKB/TrEMBL
Superfamily-SCOP Cytochrome c UniProtKB/TrEMBL
UniProt I3MXS4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101976326  cytochrome c, somatic-like  LOC101976326  cytochrome c, somatic pseudogene  Symbol and/or name change 5135510 APPROVED