Samd10 (sterile alpha motif domain containing 10) - Rat Genome Database

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Gene: Samd10 (sterile alpha motif domain containing 10) Ictidomys tridecemlineatus
Analyze
Symbol: Samd10
Name: sterile alpha motif domain containing 10
RGD ID: 12561582
Description: INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 33 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasmic side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sterile alpha motif domain containing 10, transcript variant X1; sterile alpha motif domain containing 10, transcript variant X2; sterile alpha motif domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,715,822 - 195,720,349 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,167,305 - 11,173,877 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,169,167 - 11,173,956 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Samd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,715,822 - 195,720,349 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,167,305 - 11,173,877 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,169,167 - 11,173,956 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,974,116 - 63,980,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,974,116 - 63,980,008 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,605,469 - 62,610,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,075,910 - 62,081,439 (-)NCBINCBI36Build 36hg18NCBI36
Build 342062,075,911 - 62,081,436NCBI
Celera2059,292,100 - 59,297,628 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,340,220 - 59,345,748 (-)NCBIHuRef
CHM1_12062,506,542 - 62,512,053 (-)NCBICHM1_1
T2T-CHM13v2.02065,793,877 - 65,799,906 (-)NCBIT2T-CHM13v2.0
Samd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,237,008 - 181,241,227 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,237,011 - 181,241,005 (-)EnsemblGRCm39 Ensembl
GRCm382181,595,215 - 181,599,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,595,218 - 181,599,212 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,329,923 - 181,333,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,524,625 - 181,528,554 (-)NCBIMGSCv36mm8
Celera2185,676,815 - 185,680,744 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.67NCBI
Samd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83189,077,795 - 189,082,069 (-)NCBIGRCr8
mRatBN7.23168,700,280 - 168,704,427 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,700,284 - 168,705,248 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,080,186 - 173,083,590 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03182,039,280 - 182,042,684 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,701,923 - 178,705,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03177,091,467 - 177,095,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,091,457 - 177,095,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,800,930 - 180,805,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,734,454 - 170,737,867 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3163,883,197 - 163,886,610 (+)NCBICelera
Cytogenetic Map3q43NCBI
Samd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528281,932 - 284,386 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528279,481 - 284,386 (+)NCBIChiLan1.0ChiLan1.0
SAMD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,793,418 - 69,799,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,785,431 - 69,791,076 (-)NCBINHGRI_mPanPan1
PanPan1.12061,892,527 - 61,897,863 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,892,527 - 61,897,863 (-)Ensemblpanpan1.1panPan2
SAMD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,436,158 - 47,441,109 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,437,538 - 47,441,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,569,604 - 46,574,791 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,575,186 - 48,580,373 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,484,674 - 48,580,380 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12447,419,393 - 47,424,564 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,544,287 - 47,549,461 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,282,707 - 48,287,894 (-)NCBIUU_Cfam_GSD_1.0
SAMD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,809,504 - 62,813,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,809,504 - 62,813,993 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SAMD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12260,273 - 266,808 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,551 - 265,400 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,791,166 - 47,796,793 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Samd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,596,069 - 29,599,799 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,595,489 - 29,599,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000031432   ⟹   ENSSTOP00000032435
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651411,167,305 - 11,173,877 (-)Ensembl
RefSeq Acc Id: XM_005325351   ⟹   XP_005325408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,715,822 - 195,720,347 (-)NCBI
SpeTri2.0NW_00493651411,169,167 - 11,173,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726437   ⟹   XP_021582112
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,715,822 - 195,720,349 (-)NCBI
SpeTri2.0NW_00493651411,169,167 - 11,173,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275074   ⟹   XP_040131008
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,715,822 - 195,720,349 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005325408 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582112 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131008 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000032435.1
GenBank Protein KAG3263738 (Get FASTA)   NCBI Sequence Viewer  
  KAG3263739 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005325408   ⟸   XM_005325351
- Peptide Label: isoform X2
- UniProtKB: A0A287DFX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582112   ⟸   XM_021726437
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040131008   ⟸   XM_040275074
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000032435   ⟸   ENSSTOT00000031432
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000031237 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000031432.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Aveugle-like_SAM_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene Samd10 ENTREZGENE
PANTHER STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10 UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam SAM_2 UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A287DFX8 ENTREZGENE, UniProtKB/TrEMBL