LOC101968474 (calcium-binding protein 1) - Rat Genome Database

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Gene: LOC101968474 (calcium-binding protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101968474
Name: calcium-binding protein 1
RGD ID: 12547514
Description: ENCODES a protein that exhibits calcium ion binding (inferred); G-protein beta/gamma-subunit complex binding (inferred); heterotrimeric G-protein binding (inferred); INVOLVED IN centriole replication (inferred); mitotic cell cycle (inferred); FOUND IN centriole (inferred); centrosome (inferred); ciliary basal body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrin-4
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,294,722 - 65,300,312 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366621,819,467 - 1,825,057 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013363437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013363437   ⟹   XP_013218891
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,294,722 - 65,300,312 (+)NCBI
SpeTri2.0NW_0049366621,819,467 - 1,825,057 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013218891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019105.2
  ENSSTOP00000025487.1
  ENSSTOP00000031869.1
GenBank Protein KAG3276234 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013218891   ⟸   XM_013363437
- Sequence:
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024309 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022463.2 UniProtKB/TrEMBL
  ENSSTOT00000039497.1 UniProtKB/TrEMBL
  ENSSTOT00000040091.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene LOC101968474 ENTREZGENE
PANTHER CALCIUM BINDING PROTEIN UniProtKB/TrEMBL
  CENTRIN-4 UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PRINTS PARVALBUMIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287CW07_ICTTR UniProtKB/TrEMBL
  A0A287DEA7_ICTTR UniProtKB/TrEMBL
  I3N409_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101968474  calcium-binding protein 1    centrin-4  Symbol and/or name change 5135510 APPROVED