Stard13 (StAR related lipid transfer domain containing 13) - Rat Genome Database

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Gene: Stard13 (StAR related lipid transfer domain containing 13) Ictidomys tridecemlineatus
Analyze
Symbol: Stard13
Name: StAR related lipid transfer domain containing 13
RGD ID: 12547417
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); lipid binding (inferred); INVOLVED IN angiogenesis involved in wound healing (ortholog); endothelial cell migration (ortholog); endothelial tube lumen extension (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: StAR related lipid transfer domain containing 13, transcript variant X1; StAR related lipid transfer domain containing 13, transcript variant X2; StAR related lipid transfer domain containing 13, transcript variant X3; stAR-related lipid transfer protein 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945167,793,840 - 168,268,130 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647227,683,923 - 27,741,339 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647227,683,939 - 28,158,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stard13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945167,793,840 - 168,268,130 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647227,683,923 - 27,741,339 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647227,683,939 - 28,158,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381333,103,137 - 33,676,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1333,103,137 - 33,350,630 (-)EnsemblGRCh38hg38GRCh38
GRCh371333,677,274 - 34,250,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361332,575,307 - 32,757,892 (-)NCBINCBI36Build 36hg18NCBI36
Build 341332,610,565 - 32,757,878NCBI
Celera1314,744,113 - 14,926,471 (-)NCBICelera
Cytogenetic Map13q13.1-q13.2NCBI
HuRef1314,489,080 - 15,062,575 (-)NCBIHuRef
CHM1_11333,644,794 - 34,218,882 (-)NCBICHM1_1
T2T-CHM13v2.01332,320,452 - 32,894,146 (-)NCBIT2T-CHM13v2.0
Stard13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395150,960,975 - 151,351,780 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5150,960,975 - 151,157,301 (-)EnsemblGRCm39 Ensembl
GRCm385151,037,515 - 151,428,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5151,037,510 - 151,233,836 (-)EnsemblGRCm38mm10GRCm38
MGSCv375151,840,090 - 151,992,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365151,306,009 - 151,458,573 (-)NCBIMGSCv36mm8
Celera5149,041,974 - 149,194,711 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.82NCBI
Stard13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,401,878 - 5,797,937 (-)NCBIGRCr8
mRatBN7.212566,282 - 959,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12566,310 - 959,421 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,140,224 - 1,310,853 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,662,449 - 1,833,090 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012563,162 - 731,010 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0121,023,494 - 1,418,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,007,710 - 1,397,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,502,402 - 3,696,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera122,270,772 - 2,437,811 (-)NCBICelera
Cytogenetic Map12p12NCBI
Stard13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543112,557,146 - 12,734,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543112,221,980 - 12,732,894 (+)NCBIChiLan1.0ChiLan1.0
STARD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21432,666,372 - 32,914,867 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11323,772,697 - 24,021,133 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01314,359,252 - 14,607,742 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11332,789,583 - 33,038,861 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1332,789,587 - 33,038,606 (-)Ensemblpanpan1.1panPan2
STARD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,605,057 - 7,117,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,872,773 - 7,115,466 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,641,722 - 7,153,942 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0256,714,448 - 7,227,518 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,984,416 - 7,226,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,613,183 - 7,125,461 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,605,166 - 7,117,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0256,803,969 - 7,181,538 (+)NCBIUU_Cfam_GSD_1.0
STARD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1119,518,135 - 9,738,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2119,429,631 - 9,618,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1311,837,218 - 12,388,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl311,836,977 - 11,974,362 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605731,963,206 - 32,512,077 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247764,371,126 - 4,540,711 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247763,998,594 - 4,539,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006636   ⟹   ENSSTOP00000005935
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647227,686,298 - 27,741,339 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035377   ⟹   ENSSTOP00000031046
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647227,683,923 - 27,710,202 (-)Ensembl
RefSeq Acc Id: XM_005317086   ⟹   XP_005317143
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,105,976 - 168,268,130 (+)NCBI
SpeTri2.0NW_00493647227,683,939 - 27,846,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005317087   ⟹   XP_005317144
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,105,977 - 168,268,130 (+)NCBI
SpeTri2.0NW_00493647227,683,939 - 27,846,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360729   ⟹   XP_013216183
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945167,793,840 - 168,268,130 (+)NCBI
SpeTri2.0NW_00493647227,683,939 - 28,158,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040281608   ⟹   XP_040137542
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,055,182 - 168,268,130 (+)NCBI
RefSeq Acc Id: XM_040281609   ⟹   XP_040137543
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,055,183 - 168,268,130 (+)NCBI
RefSeq Acc Id: XM_040281610   ⟹   XP_040137544
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,175,462 - 168,268,130 (+)NCBI
RefSeq Acc Id: XM_040281611   ⟹   XP_040137545
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,192,058 - 168,268,130 (+)NCBI
RefSeq Acc Id: XM_040281612   ⟹   XP_040137546
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945168,175,464 - 168,268,130 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013216183   ⟸   XM_013360729
- Peptide Label: isoform X5
- UniProtKB: I3M8A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317144   ⟸   XM_005317087
- Peptide Label: isoform X3
- UniProtKB: I3M8A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317143   ⟸   XM_005317086
- Peptide Label: isoform X1
- UniProtKB: I3M8A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040137542   ⟸   XM_040281608
- Peptide Label: isoform X2
- UniProtKB: I3M8A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137543   ⟸   XM_040281609
- Peptide Label: isoform X4
- UniProtKB: I3M8A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137544   ⟸   XM_040281610
- Peptide Label: isoform X6
- UniProtKB: A0A287DC29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137546   ⟸   XM_040281612
- Peptide Label: isoform X7
- UniProtKB: A0A287DC29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137545   ⟸   XM_040281611
- Peptide Label: isoform X6
- UniProtKB: A0A287DC29 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000005935   ⟸   ENSSTOT00000006636
RefSeq Acc Id: ENSSTOP00000031046   ⟸   ENSSTOT00000035377
Protein Domains
Rho-GAP   START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006622 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006636.3 UniProtKB/TrEMBL
  ENSSTOT00000035377.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.2070 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
  6.10.250.1870 UniProtKB/TrEMBL
InterPro Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene Stard13 ENTREZGENE
PANTHER RHO-TYPE GTPASE ACTIVATING PROTEIN UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 13 UniProtKB/TrEMBL
Pfam RhoGAP UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PROSITE RHOGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  SSF47769 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
UniProt A0A287DC29 ENTREZGENE, UniProtKB/TrEMBL
  I3M8A2 ENTREZGENE, UniProtKB/TrEMBL