LOC101956023 (uncharacterized LOC101956023) - Rat Genome Database

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Gene: LOC101956023 (uncharacterized LOC101956023) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956023 (Ensembl: HMGN2)
Name: uncharacterized LOC101956023 (Ensembl:high mobility group nucleosomal binding domain 2)
RGD ID: 12545625
Description: ENCODES an ncrna that exhibits chromatin binding (inferred); nucleosomal DNA binding (inferred); INVOLVED IN chromatin organization (inferred); FOUND IN chromatin (inferred); nucleus (inferred)
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,126,322 - 45,127,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,951,040 - 10,952,622 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,951,065 - 10,952,654 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_257660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000042671   ⟹   ENSSTOP00000031583
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647410,951,040 - 10,952,622 (+)Ensembl
RefSeq Acc Id: XR_257660
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,126,322 - 45,127,872 (+)NCBI
SpeTri2.0NW_00493647410,951,065 - 10,952,654 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSSTOP00000031583.1
Reference Protein Sequences
RefSeq Acc Id: ENSSTOP00000031583   ⟸   ENSSTOT00000042671


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030691 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000042671.1 UniProtKB/TrEMBL
InterPro HMGN_fam UniProtKB/TrEMBL
NCBI Gene LOC101956023 ENTREZGENE
PANTHER NON-HISTONE CHROMOSOMAL PROTEIN HMG-17 UniProtKB/TrEMBL
  NONHISTONE CHROMOSOMAL PROTEIN HMG UniProtKB/TrEMBL
Pfam HMG14_17 UniProtKB/TrEMBL
PRINTS NONHISHMG17 UniProtKB/TrEMBL
PROSITE HMG14_17 UniProtKB/TrEMBL
SMART HMG17 UniProtKB/TrEMBL
UniProt A0A287DDG6_ICTTR UniProtKB/TrEMBL