| Gene: Sowahb (sosondowah ankyrin repeat domain family member B) Ictidomys tridecemlineatus |
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Analyze |
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| Symbol: |
Sowahb |
| Name: |
sosondowah ankyrin repeat domain family member B |
| RGD ID: |
12541549 |
| Description: |
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| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
ankyrin repeat domain-containing protein SOWAHB |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
| Position: |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
Sowahb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SOWAHB
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 76,894,152 - 76,898,144 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 76,894,152 - 76,898,144 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 77,815,305 - 77,819,297 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 78,035,106 - 78,038,026 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 75,117,434 - 75,120,354 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q21.1 | NCBI | | | | | HuRef | 4 | 73,568,396 - 73,571,316 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 77,792,588 - 77,795,508 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 80,234,914 - 80,238,906 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Sowahb
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 93,188,981 - 93,192,910 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 93,188,982 - 93,192,881 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 93,041,123 - 93,045,022 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 93,041,123 - 93,045,022 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 93,470,149 - 93,474,048 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 94,116,375 - 94,120,155 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 91,194,083 - 91,197,982 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | E2 | NCBI | | | | | cM Map | 5 | 47.29 | NCBI | | | | |
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Sowahb
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 15,313,561 - 15,317,396 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 15,029,203 - 15,033,038 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 15,029,395 - 15,031,698 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 15,038,041 - 15,041,876 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 16,357,056 - 16,360,891 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 15,052,292 - 15,056,127 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 16,491,023 - 16,495,764 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 16,491,573 - 16,493,876 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 16,417,015 - 16,421,756 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 16,587,783 - 16,590,086 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 14 | 16,587,782 - 16,590,086 (+) | NCBI | | | | | Celera | 14 | 14,431,239 - 14,435,980 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | p22 | NCBI | | | | |
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Sowahb
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955433 | 1,539,001 - 1,541,370 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955433 | 1,537,658 - 1,541,574 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SOWAHB
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 53,169,135 - 53,180,147 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 53,357,354 - 53,374,524 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 47,256,096 - 47,317,472 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 53,142,782 - 53,156,323 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 53,144,284 - 53,146,343 (+) | Ensembl | panpan1.1 | | panPan2 | |
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SOWAHB
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 32 | 1,473,709 - 1,476,660 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 32 | 1,474,316 - 1,476,535 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 32 | 40,409,534 - 40,412,391 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 32 | 1,497,526 - 1,500,406 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 32 | 1,498,144 - 1,500,379 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 32 | 1,495,048 - 1,497,905 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 32 | 1,450,923 - 1,453,790 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 32 | 38,721,951 - 38,724,808 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SOWAHB
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 8 | 72,539,307 - 72,543,298 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 72,538,804 - 72,543,316 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 76,737,802 - 76,742,371 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SOWAHB
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 7 | 25,389,247 - 25,400,161 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 25,397,385 - 25,399,766 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 3,742,522 - 3,753,488 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Sowahb
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSSTOT00000027212 ⟹ ENSSTOP00000015649 |
| Type: |
CODING |
| Position: |
| Squirrel Assembly | Chr | Position (strand) | Source |
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SpeTri2.0 Ensembl | NW_004936676 | 804,782 - 807,112 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_005337263 ⟹ XP_005337320 |
| Type: |
CODING |
| Position: |
| Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024405285 | 10,699,976 - 10,703,776 (+) | NCBI | SpeTri2.0 | NW_004936676 | 804,411 - 807,653 (-) | NCBI |
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| Sequence: |
CTGCTTTCCACTTCCCGGGCCAGGAGTGACCGCGCGTCCTGCCGAGAGGTTCGCTGCCCGCCGA
GGTTCACTCCCGACCTCACCTACCGGTGCTCTCTGCGCCTCTGACCAGCCTGACTCATCCGGGA
TGGGTGGGGGAGACCTCAGAGGGCGGAGGGACAGGAGGAGGCGGGCCGGGCCCTTCCCCCAGAG
CCAGGGAGGAGGCGTCTCCAGGGCAGGTGAAACCGACTCCGACCTATCCCGGGAACTTTCGGTG
CGGGGACTCGCAGCTAGAGGCCCGCGCTGCGCTGGGGCCGCGGAGGAGCCGCCCTCTCCCATCC
GGGCTGCGCGCTGGGGCTCAGCCTGGGGGCTGCCCCCTGAGGACCCTCAGCCCTCCTGGCGCGC
TCGTTGGCTGCGGGCAGCGCTGGCCTCAGCGGCTGATGGAGGCGGGTGGTGCCGCCCAGGGCGC
AGGTGACACTCTCGCGGCCAGGGTTTCTGCTGGAAGGGAAGACCACCGGGAGGGCGAGACGCAG
ACTCCTCGTGGGCAAGGGGCAAGGCAGCGATGGCCCTAGAGCTGAGCCAGGAGGCACTACTGGA
CTTTCTGTGCCAGGCTGGGGGCCGAGTGACCAACGCCGCCCTGCTGAGCCACTTCAAGAGCTTT
CTCCGAGACCCCTACGCGTCCCCCAGCCAGCATCAGCAACGCCGCGAGCTCTTCAAAGGCTTCG
TCAACTCGGTCGCCGCAGTGCGCCAGGACCCCGACGGCACCAAGTATGTCGTGCTCAAGAGGAG
GTATAGGGACCTTTTGGGGGAGGAGGGGCTGCAGCGACCCCGCGAGCCGCCTGCTGCCGCTGCC
CCTGCAAGGGGAACTGCTCCCAGCTCCCTGCCGAGCGCACGCTGTGGGGAGCCTCAGCCACCGC
AGTCTCGGCGGCGGCGGCGCGACAGGGAGCCAGAGGAGGAGCCAGCAGGTACCGCAGCCCTAGC
CGAGGTCGCAGGTTGCAATGGACTCCCGCCCAGAAGAACCCGGGAAGCTACCAAGGAAGACGGC
GGCCAGAGGCTCAGCCCGGGCCGAAGGGCTCCGGTGCCGGTGGCTACGGCGGCAGCTGCAACCA
GGTGCGCGGCGGCGGAGACGCAGGGCCGCTGCTGCTGGGAATGTCTCCAGAACAGCCTGGGGGA
GCTCCCGGAAGTGCCGCCACTCGGAGCACTCCCGGACCCTGCCACTGCCAAGGAGAAGCCCGCG
CGAGCTCAGCCTGCTCAAGATGACTGTGGGGCTCCAAGGCAGCTGCCAGAAGGCGCGCGGGCTG
AGCCCACGCAGGTGCCTGCAACGCCCAGCTCGCCTCCCGCCATCACCGAAGCTGCTGAGTGCAG
GGTATCTCCTCCAGTTCTCCTGCCCCGCCCCACCCCTCCAGGAGACCGACCAGAGCTGTTGACC
TCAGGTTTCCTGCACCATTCCACTCTGCAACTGCAGCAGCAGCGCACTCGAGAATGGGTAGCCA
GACACCCTCAGATGCCCCAGACCCGAGACCAGGGTCCCATTCGGGCCTGGTCAGTGTTGCCGGA
CAACTTTCTCAGGATTCCCTTGGAGCCAAACTTAGAGACTAAATCACCGCTGTCAGAGCTCCCT
CATTTCTCTCATTCTCTCTTTCCTGTGGTTCCTGAAGAGTCCCCAGGTTCGTGGCCAGGGAATC
CTCCACAGGCTGTCTTTCGTAGCATTCGTTGTCAGTTATCCCTCCAAGATCTGGATGACTTTGT
GGACCAGGAGAGCCATGGCAGTGAGGAGAGCAGCAGTGGGCCCAAAGAGTCCCCTGGGGGTTCT
GAAGAGGGGTTACAAGTTGCCTTGGGAACCCCAGTTTGGGGAAAGCTCAGGAATCCAGCTGGGG
GCCTATCTGTACCTCCAAAGAAAGGCAGCCCTCAGAGTCCTCAGGGCCTCAGGAACAGAGGGAA
CGGTCATACCTCTCAACAAGTTCCAACAGGGGCTAAAGGCCCCCCACACCACTCCCAGGAGCCT
TTGCCTTGGCCAGCTCCCAAGTTAAGGAGGTCTCTCAGAAGGAGCTTTAGGGCAGGCAAGGCCA
AACTGTCTTCCTCTGATGAAGAGTACCTTGATGAGGACTTGCTGAAAAGGAGTCGTCGCCCACC
ACGCCCCAGGAAACCTTCCAAGGCAGGAACAATGCCCAGCCCAAGAGTGGATGCAGCTTTGACA
CTGAAACTGGCAGACACTAGGGTCTCCAGTGGGAATGGGTCTGCCGCCTTGGTACCCCACAGAA
CTTCTGAGCACAAGTCATCACTGGTCCCCCTAGATGCCAGGGAGCATGAATGGATTGTGAAGCT
TGCCAGTGGCTCTTGGATTGAGGTGTTGACGCTGTTTTGGGAGGACCCTCAGTTGGCTTTGCAC
AAAGACTTCTTGACTGGATACACTGCCTTGCACTGGATAGCCAAACATGGCAACCTTCAGGCCC
TTCAGGACTTGGTCTCAGGAGCACGGAAGACAGGGATTGTACTTGATATAAATGTGAAGTCTAG
TAGTGGGTATACCCCACTACACCTTGCAGCCATTCATGGCCACCAGGGAGTCATCAAACTGCTA
GTGCAAAAGTTGTCTTCTCGGGTGAACGTCCGGGACAGCAGTGGAAAGAAACCATGGCAATATC
TGACCAGTAATACCTCTGGGGAAATATGGCAGCTGCTGGGAGCTCCTCGGGGCAAGCCCATTTT
CTCTGTATATCCCTTAGTCCAAAGCTCTTCCCCTACTAGGAAGGCCAAGAGCCGGGAAGTATCT
AGAAATGTCACCCGAAAGACTTCCTTAGCTGCACTACTCAAAAGTCACCACAACAAATGGAAAC
TGGCCAACCAGTATGAGAAATTCCCTACTCCACGGGTAGAAGAGTATAGTGACTGAGGTGGGCC
CCTCTGTCCAACATGCAGCAACCACACTCTCATCTTTTGAGTACTCAGAGAATTCAGGGAGAAT
AGAAAAGCAGCTGAGGGGTTGGCAAAGAGAAAGGTCAAGTGGAATGGACTCCCTGGGTTTCCTG
TCAGCACAGTGGACCTTAGGAGCCATCTCAGCTTTGTGAAGGCTCATGTTCTTGGGCCAGTGAA
GCCTAGCCAAGTGGCAAAGCCAGCACTCACAACTCAGGAGGTATTCTAGCATTTCCTTTGCCAG
TGGAAATTTTAGGCACAGTAAGCTACATTGTTTTTTTGAAGCAGCAATCCTAGGCCTTGGCTAG
AAAGGTAACAGATGTCCAACAAAAAAAGAAGCAATTAAAAGAA
hide sequence
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| RefSeq Acc Id: |
XP_005337320 ⟸ XM_005337263 |
| - UniProtKB: |
I3MU54 (UniProtKB/TrEMBL) |
| - Sequence: |
MALELSQEALLDFLCQAGGRVTNAALLSHFKSFLRDPYASPSQHQQRRELFKGFVNSVAAVRQD
PDGTKYVVLKRRYRDLLGEEGLQRPREPPAAAAPARGTAPSSLPSARCGEPQPPQSRRRRRDRE
PEEEPAGTAALAEVAGCNGLPPRRTREATKEDGGQRLSPGRRAPVPVATAAAATRCAAAETQGR
CCWECLQNSLGELPEVPPLGALPDPATAKEKPARAQPAQDDCGAPRQLPEGARAEPTQVPATPS
SPPAITEAAECRVSPPVLLPRPTPPGDRPELLTSGFLHHSTLQLQQQRTREWVARHPQMPQTRD
QGPIRAWSVLPDNFLRIPLEPNLETKSPLSELPHFSHSLFPVVPEESPGSWPGNPPQAVFRSIR
CQLSLQDLDDFVDQESHGSEESSSGPKESPGGSEEGLQVALGTPVWGKLRNPAGGLSVPPKKGS
PQSPQGLRNRGNGHTSQQVPTGAKGPPHHSQEPLPWPAPKLRRSLRRSFRAGKAKLSSSDEEYL
DEDLLKRSRRPPRPRKPSKAGTMPSPRVDAALTLKLADTRVSSGNGSAALVPHRTSEHKSSLVP
LDAREHEWIVKLASGSWIEVLTLFWEDPQLALHKDFLTGYTALHWIAKHGNLQALQDLVSGARK
TGIVLDINVKSSSGYTPLHLAAIHGHQGVIKLLVQKLSSRVNVRDSSGKKPWQYLTSNTSGEIW
QLLGAPRGKPIFSVYPLVQSSSPTRKAKSREVSRNVTRKTSLAALLKSHHNKWKLANQYEKFPT
PRVEEYSD
hide sequence
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| RefSeq Acc Id: |
ENSSTOP00000015649 ⟸ ENSSTOT00000027212 |
Additional Information
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