Phtf1 (putative homeodomain transcription factor 1) - Rat Genome Database

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Gene: Phtf1 (putative homeodomain transcription factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Phtf1
Name: putative homeodomain transcription factor 1
RGD ID: 12538768
Description: ASSOCIATED WITH hereditary spastic paraplegia 47 (ortholog); RASopathy (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505815,349,594 - 15,386,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366902,091,424 - 2,128,561 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366902,091,427 - 2,129,758 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phtf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505815,349,594 - 15,386,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366902,091,424 - 2,128,561 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366902,091,427 - 2,129,758 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,696,831 - 113,759,888 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,696,831 - 113,759,489 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,239,453 - 114,302,510 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,041,360 - 114,102,879 (-)NCBINCBI36Build 36hg18NCBI36
Build 341113,951,878 - 114,013,398NCBI
Celera1112,469,051 - 112,531,003 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1112,097,398 - 112,159,913 (-)NCBIHuRef
CHM1_11114,354,665 - 114,416,622 (-)NCBICHM1_1
T2T-CHM13v2.01113,708,467 - 113,771,550 (-)NCBIT2T-CHM13v2.0
Phtf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,875,426 - 103,914,806 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,875,426 - 103,931,914 (+)EnsemblGRCm39 Ensembl
GRCm383103,968,110 - 104,007,490 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,968,110 - 104,024,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,772,033 - 103,811,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,097,319 - 104,136,551 (+)NCBIMGSCv36mm8
Celera3106,170,474 - 106,209,996 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.52NCBI
Phtf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,161,343 - 194,249,925 (+)NCBIGRCr8
mRatBN7.22191,470,849 - 191,537,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,473,130 - 191,512,078 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,069,880 - 199,108,666 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,942,616 - 196,981,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02191,759,582 - 191,798,367 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,452,115 - 206,518,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,454,208 - 206,493,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,875,915 - 225,939,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,202,647 - 199,241,476 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12199,165,394 - 199,180,520 (+)NCBI
Celera2183,944,349 - 183,983,177 (+)NCBICelera
Cytogenetic Map2q34NCBI
Phtf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,975,856 - 17,025,861 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,972,120 - 17,025,861 (-)NCBIChiLan1.0ChiLan1.0
PHTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21106,355,814 - 106,418,744 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11105,949,211 - 106,013,480 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0188,796,456 - 88,860,464 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11123,844,587 - 123,906,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1123,845,818 - 123,906,285 (+)Ensemblpanpan1.1panPan2
PHTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,529,981 - 51,573,748 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,530,346 - 51,573,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1751,181,790 - 51,225,448 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01752,408,517 - 52,452,102 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1752,408,523 - 52,451,707 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11751,411,062 - 51,459,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01751,483,301 - 51,527,032 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,056,526 - 52,100,236 (-)NCBIUU_Cfam_GSD_1.0
PHTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4106,809,391 - 106,876,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14106,808,926 - 106,885,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,955,869 - 117,030,674 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHTF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,910,090 - 19,969,395 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603822,680,803 - 22,741,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phtf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247729,377,777 - 9,415,681 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247729,370,231 - 9,415,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005576   ⟹   ENSSTOP00000004990
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366902,091,927 - 2,127,300 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030147   ⟹   ENSSTOP00000026021
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366902,091,439 - 2,128,561 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030759   ⟹   ENSSTOP00000028863
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366902,091,927 - 2,127,300 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000031736   ⟹   ENSSTOP00000024073
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366902,091,424 - 2,128,561 (-)Ensembl
RefSeq Acc Id: XM_005337639   ⟹   XP_005337696
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,349,596 - 15,386,295 (+)NCBI
SpeTri2.0NW_0049366902,091,427 - 2,129,757 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363956   ⟹   XP_013219410
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,349,595 - 15,386,304 (+)NCBI
SpeTri2.0NW_0049366902,091,427 - 2,129,757 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734786   ⟹   XP_021590461
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,349,594 - 15,386,304 (+)NCBI
SpeTri2.0NW_0049366902,091,427 - 2,129,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734787   ⟹   XP_021590462
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,370,412 - 15,386,304 (+)NCBI
SpeTri2.0NW_0049366902,091,427 - 2,107,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287358   ⟹   XP_040143292
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,350,401 - 15,386,304 (+)NCBI
RefSeq Acc Id: XM_040287359   ⟹   XP_040143293
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505815,350,401 - 15,384,567 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005337696   ⟸   XM_005337639
- Peptide Label: isoform X1
- UniProtKB: A0A287CS25 (UniProtKB/TrEMBL),   A0A287D5P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013219410   ⟸   XM_013363956
- Peptide Label: isoform X2
- UniProtKB: A0A287D5P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590461   ⟸   XM_021734786
- Peptide Label: isoform X4
- UniProtKB: I3M6B5 (UniProtKB/TrEMBL),   A0A287D5P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590462   ⟸   XM_021734787
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040143292   ⟸   XM_040287358
- Peptide Label: isoform X1
- UniProtKB: A0A287CS25 (UniProtKB/TrEMBL),   A0A287D5P2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143293   ⟸   XM_040287359
- Peptide Label: isoform X3
- UniProtKB: A0A287D5P2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004990   ⟸   ENSSTOT00000005576
RefSeq Acc Id: ENSSTOP00000024073   ⟸   ENSSTOT00000031736
RefSeq Acc Id: ENSSTOP00000028863   ⟸   ENSSTOT00000030759
RefSeq Acc Id: ENSSTOP00000026021   ⟸   ENSSTOT00000030147
Protein Domains
PHTF1/2 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005566 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005576.3 UniProtKB/TrEMBL
  ENSSTOT00000030147.1 UniProtKB/TrEMBL
  ENSSTOT00000030759.1 UniProtKB/TrEMBL
  ENSSTOT00000031736.1 UniProtKB/TrEMBL
InterPro PHTF1/2 UniProtKB/TrEMBL
  TF_homeodomain_male UniProtKB/TrEMBL
NCBI Gene Phtf1 ENTREZGENE
PANTHER PROTEIN PHTF1 UniProtKB/TrEMBL
  PTHR12680 UniProtKB/TrEMBL
Pfam Phtf-FEM1B_bdg UniProtKB/TrEMBL
UniProt A0A287CS25 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CXL2_ICTTR UniProtKB/TrEMBL
  A0A287D5P2 ENTREZGENE, UniProtKB/TrEMBL
  I3M6B5 ENTREZGENE, UniProtKB/TrEMBL