Scmh1 (Scm polycomb group protein homolog 1)

Gene: Scmh1 (Scm polycomb group protein homolog 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Scmh1

Name:

Scm polycomb group protein homolog 1

RGD ID:

12536632

Description:

ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); chromatin remodeling (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); immunodeficiency 24 (ortholog); FOUND IN chromocenter (inferred); male germ cell nucleus (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

polycomb protein SCMH1; sex comb on midleg homolog 1; sex comb on midleg homolog 1 (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	56,818,076 - 56,959,576 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	22,647,334 - 22,774,405 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	22,648,156 - 22,784,399 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

immunodeficiency 24 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (IEA,ISO)

chromatin remodeling (IEA,ISO)

negative regulation of DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

chromocenter (IEA)

male germ cell nucleus (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

histone binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Scmh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	56,818,076 - 56,959,576 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	22,647,334 - 22,774,405 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	22,648,156 - 22,784,399 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCMH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	41,027,202 - 41,242,306 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	41,027,202 - 41,242,306 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	41,492,874 - 41,707,978 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	41,265,461 - 41,480,375 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	41,161,969 - 41,376,881	NCBI
Celera	1	39,775,792 - 39,990,782 (-)	NCBI		Celera
Cytogenetic Map	1	p34.2	NCBI
HuRef	1	39,609,958 - 39,825,006 (-)	NCBI		HuRef
CHM1_1	1	41,608,779 - 41,823,761 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	40,896,567 - 41,111,749 (-)	NCBI		T2T-CHM13v2.0

Scmh1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	120,262,347 - 120,387,397 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	120,262,478 - 120,387,383 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	120,405,150 - 120,530,200 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	120,405,281 - 120,530,186 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	120,077,886 - 120,202,804 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	119,903,044 - 120,027,590 (+)	NCBI		MGSCv36	mm8
Celera	4	119,122,290 - 119,247,186 (+)	NCBI		Celera
Cytogenetic Map	4	D2.1	NCBI
cM Map	4	56.52	NCBI

Scmh1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	139,276,352 - 139,401,118 (+)	NCBI		GRCr8
mRatBN7.2	5	133,991,167 - 134,115,893 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	133,990,520 - 134,122,105 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	136,757,225 - 136,843,663 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	138,513,679 - 138,600,119 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	138,534,308 - 138,620,740 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	139,379,256 - 139,466,805 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	139,385,429 - 139,466,081 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	143,162,751 - 143,249,837 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	141,039,645 - 141,127,334 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	141,006,241 - 141,132,777 (+)	NCBI
Celera	5	132,585,181 - 132,671,540 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Scmh1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955537	824,828 - 937,324 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955537	819,209 - 971,297 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCMH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	185,571,699 - 185,788,728 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	184,713,709 - 184,930,344 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	40,323,101 - 40,540,236 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	41,639,127 - 41,809,094 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	41,639,127 - 41,776,261 (-)	Ensembl	panpan1.1		panPan2

SCMH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	1,917,503 - 2,056,325 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	1,917,509 - 2,058,904 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	2,138,061 - 2,315,655 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	1,969,172 - 2,146,826 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	1,969,227 - 2,146,822 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	1,874,915 - 2,052,478 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	1,934,876 - 2,112,665 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	1,950,439 - 2,128,033 (+)	NCBI		UU_Cfam_GSD_1.0

SCMH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	169,999,792 - 170,189,353 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	169,999,763 - 170,189,357 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	157,208,869 - 157,236,957 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCMH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	91,724,068 - 91,890,131 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	91,751,977 - 91,889,164 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	24,991,230 - 25,217,051 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scmh1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624892	435,459 - 550,941 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624892	435,145 - 621,203 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005317876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021736012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021736014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021736026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013101 ⟹ ENSSTOP00000011742

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936474	22,648,484 - 22,765,490 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040345 ⟹ ENSSTOP00000031016

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936474	22,647,334 - 22,774,405 (-)	Ensembl

RefSeq Acc Id:

XM_013364408 ⟹ XP_013219862

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,156 - 22,784,397 (-)	NCBI

Sequence:

show sequence

TTAATAACCATTCTCCTTCTTCTCCCCTCATCAACTTTGCAGATGGAGAAAATAACATACAGAG
AAATTGGCTTGTCAGAAGTCAGAGCAAGATTTTGGCGGATCCAGGGATAAATCCCAAACCTCAT
AACTCCTTAAGCAGTCTTTAGTTCATTGATTATGCAGCCTAGTGTAATAAACTGGAATGAAGTT
AGAAAATACAAATATGGTCACCTATCAGAGTCTGCATCCCAATATCAAGAAACTGGTGACATCC
TGGAGCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGT
CCATTGCTTCAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGCATGAAATTGGAA
GCACAGGACCCCAGGAACACCACATCCACATGTATTGCCACAGTAGTTGGACTGACAGGTGCCC
GCCTCCGCCTGCGCCTTGATGGTAGTGACAACAAGAATGACTTCTGGCGGCTGGTTGACTCAGC
TGAAATCCAGCCTGTTGGGAACTGTGAGAAGAATGGGGGTATGCTTCAGCCACCTCTGGGATTT
CGGCTGAATGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTC
CCATCAGGATTTTCCACAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAA
GCTGGAAGCTGTAGACAGGAAGAATCCTCATTTCATTTGTCCAGCCACTATAGGGGAGGTTCGG
GGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGAGCCTTTGATTACTGGTGCCGCTTCG
ACTCCCGGGACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGACAATCTACAGCCTCCTGG
CACCAAAGTTGTGATTCCAAAGAATCCCTTCCCTGCGTCTGATGTGAACACTGAGAAGTCCAGC
ATCCACAGCAGCACCAAAACTGTCTTGGAGCATCAACCAGGGCAGAGGGGGCGTAAACCAGGAA
AGAAGCGGGGTCGAACACCCAAGACCCTTATTTCCCATCCCATCTCTACCCCATCCAAGTCAGC
TGAATCTTTGAAATTCCCAAAGAAGAGGGGTCCCAAACCTGGCAGTAAGAGGAAACCTCGGACT
TTGCTGAGCCCACCACCCACCTCACCAACAACCAGCACCCCTGAACCGGATACCAGCACTGTTC
CCCAAGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAA
CAAGAATGGCAGCCCAGGCCCTCACTTAGATAAGAAGAAGATCCAACAGCTCCCTGACCATTTT
GGGCCAGCCCGTGCCTCTGTGGTATTGCAGCAGGCTGTCCAGGCATGCATCGACTGTGCTTATC
ACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGCCACGGTGGTGAGGTCATCTCAGCCGTGTT
TGACCGAGAACAGCACACCCTCAACCTCCCAGCAGTCAACAGCATCACCTATGTCCTCCGCTTC
CTGGAGAAGCTCTGCCACAACCTTCATAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGA
CTCACTTATCACTCACTGCCACAGAGTACAGCCACAGCCACGACAGGTACCTACCAGGTGAAAC
CTTTGTCTTGGGGAATAGTCTGGCCCGGTCCTTGGCACCACGCACAGATTCAATGGACTCTACG
TTGAATCCTACCAACCTTGTCAGTACCTCCCAGAATCTTCGAACTTCTGGGTACCGGCCCTTGC
TTCCCTCCTGTGGCCTCCCACAGAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGT
GTTAAAAGGATCAAATGAAAGAAGGGGTATGGAATCATTTTGGAAACTAAATCATTCCCCAGGG
TCTGACCGATACCTGGAAAGCCGGGAAGCCTCTCGACTGAGTAGCCGGGACCCCTCCTCATGGA
CAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCATGCTGACCT
CTTTCGAAAACATGAGATCGATGGCAAGGCCCTGCTTCTGCTGCGCAGTGACATGATGATGAAG
TATATGGGTCTAAAGCTGGGGCCTGCACTCAAGCTCTCCTTCCACATTGACCGGCTGAAGCAGG
GCAAGTTCTGAACAGGAGGCACAGCCTAGACAACGGAGTGGTCGGGCAGATGGGGCATTTTTCT
CCTTGGAAGAAGGCTACCAGCCTGCTCCTAGGCACCTCACTGGAGCTCAGGCCACTCCAGGACT
CCAGGAGGCTATGTGGAGCCACCACTGCTACCCCCACCCCTCTTGCCATGATGAGTCCTTCCAT
GAAGGACCAAGGAGGGGCAAATATGGGCCTGGGGCTGGCGCTGCTCTTCCCCTCAGCCCTGCCA
TGGCTCTGAGGTCCCCTCTATTTATTTTTTAAGCCCAGCTATCCTCTCACCAGGAATTTAGACT
GAGCACCGTCCAAGTGGCAGAGGAAGAGCCCTTGGACCCCCCCTACCCTGCCGCTCTCCTCCTG
GGTTTGGTGTGGCATCCCACTGCCCCACAGTGCCTGCCTTCCCACCAGATCCCAGACTCCACAA
ACTCATGGTGCAAACCTTTACCTTTTTTAAAAAAGATCTTTTCTTATTGCTAATTTATTGTTTC
TGGACTTGGGCAGACACTCTGGGTAATACTTCTCTTGCACCAGACACTGGGTTTTGAGAGTAGG
GATACTACCCTGCCCTGGTCCCAGAGAGGCCCCCAATGGGTGTAGCCCCTTTTCAGAGGACACT
GCCTAGGGTGCTTCTCTTTGGAATGGACAGACCCACGTGCTCCCATGGGGAGGAGAGGGTCATA
CTGTCTGCCTCTCTCTGCCCCCAGTGGGCCATTTGTAGCTCCAGCCCTCCTGCGGGATGGGAGC
TCTCCCACATGGTCTCCACCACAGTTCCTTACCCTCACCAGAACTGCTGCAGAAGATTGGGTCT
AATGATTTTAGGCCAAAAAGGCCCTGTGGTTGGGGGAGGGTCTCTAGGCTGGAATGTTTGCCTC
CTCGATGTCCTGTGCTTCCTTGTAAGCAAGTCAGCAGCTCAGCTGCTCCTGCTGCCATCTGGAC
TTATTTTATGTCAATTTGTTTATAAATAAAAACCAATACAGATGCCA

hide sequence

RefSeq Acc Id:

XM_013364410 ⟹ XP_013219864

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,160 - 22,784,397 (-)	NCBI

Sequence:

show sequence

TTAATAACCATTCTCCTTCTTCTCCCCTCATCAACTTTGCAGATGGAGAAAATAACATACAGAG
AAATTGGCTTGTCAGAAGTCAGAGCAAGATTTTGGCGGATCCAGGGATAAATCCCAAACCTCAT
AACTCCTTAAGCAGTCTTTAGTTCATTGATTATGCAGCCTAGTGTAATAAACTGGAATGAAGTT
AGAAAATACAAATATGGTCACCTATCAGAGTCTGCATCCCAATATCAAGGTCATTTTACCTGGG
ACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCTTCAAGCAGTCCTACAC
ACCTCCAAGCAACGAGTTCAAGATCAGCATGAAATTGGAAGCACAGGACCCCAGGAACACCACA
TCCACATGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTCCGCCTGCGCCTTGATGGTA
GTGACAACAAGAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTGTTGGGAACTG
TGAGAAGAATGGGGGTATGCTTCAGCCACCTCTGGGATTTCGGCTGAATGCCTCCTCTTGGCCC
ATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTTTCCACAAGGAGC
CACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAAGCTGGAAGCTGTAGACAGGAAGAA
TCCTCATTTCATTTGTCCAGCCACTATAGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACTTTT
GATGGGTGGCGAGGAGCCTTTGATTACTGGTGCCGCTTCGACTCCCGGGACATCTTTCCTGTGG
GCTGGTGTTCTTTGACTGGAGACAATCTACAGCCTCCTGGCACCAAAGTTGTGATTCCAAAGAA
TCCCTTCCCTGCGTCTGATGTGAACACTGAGAAGTCCAGCATCCACAGCAGCACCAAAACTGTC
TTGGAGCATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGTCGAACACCCAAGA
CCCTTATTTCCCATCCCATCTCTACCCCATCCAAGTCAGCTGAATCTTTGAAATTCCCAAAGAA
GAGGGGTCCCAAACCTGGCAGTAAGAGGAAACCTCGGACTTTGCTGAGCCCACCACCCACCTCA
CCAACAACCAGCACCCCTGAACCGGATACCAGCACTGTTCCCCAAGATGCTGCCACCATCCCCA
GCTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAACAAGAATGGCAGCCCAGGCCCTCA
CTTAGATAAGAAGAAGATCCAACAGCTCCCTGACCATTTTGGGCCAGCCCGTGCCTCTGTGGTA
TTGCAGCAGGCTGTCCAGGCATGCATCGACTGTGCTTATCACCAGAAAACTGTCTTCAGCTTCC
TCAAACAGGGCCACGGTGGTGAGGTCATCTCAGCCGTGTTTGACCGAGAACAGCACACCCTCAA
CCTCCCAGCAGTCAACAGCATCACCTATGTCCTCCGCTTCCTGGAGAAGCTCTGCCACAACCTT
CATAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACTTATCACTCACTGCCACAG
AGTACAGCCACAGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCTTGGGGAATAGTCTGGC
CCGGTCCTTGGCACCACGCACAGATTCAATGGACTCTACGTTGAATCCTACCAACCTTGTCAGT
ACCTCCCAGAATCTTCGAACTTCTGGGTACCGGCCCTTGCTTCCCTCCTGTGGCCTCCCACAGA
GCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTGTTAAAAGGATCAAATGAAAGAAG
GGGTATGGAATCATTTTGGAAACTAAATCATTCCCCAGGGTCTGACCGATACCTGGAAAGCCGG
GAAGCCTCTCGACTGAGTAGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAGTTTG
TCCGGGAAGCTGATCCTCAGCTTGGACCCCATGCTGACCTCTTTCGAAAACATGAGATCGATGG
CAAGGCCCTGCTTCTGCTGCGCAGTGACATGATGATGAAGTATATGGGTCTAAAGCTGGGGCCT
GCACTCAAGCTCTCCTTCCACATTGACCGGCTGAAGCAGGGCAAGTTCTGAACAGGAGGCACAG
CCTAGACAACGGAGTGGTCGGGCAGATGGGGCATTTTTCTCCTTGGAAGAAGGCTACCAGCCTG
CTCCTAGGCACCTCACTGGAGCTCAGGCCACTCCAGGACTCCAGGAGGCTATGTGGAGCCACCA
CTGCTACCCCCACCCCTCTTGCCATGATGAGTCCTTCCATGAAGGACCAAGGAGGGGCAAATAT
GGGCCTGGGGCTGGCGCTGCTCTTCCCCTCAGCCCTGCCATGGCTCTGAGGTCCCCTCTATTTA
TTTTTTAAGCCCAGCTATCCTCTCACCAGGAATTTAGACTGAGCACCGTCCAAGTGGCAGAGGA
AGAGCCCTTGGACCCCCCCTACCCTGCCGCTCTCCTCCTGGGTTTGGTGTGGCATCCCACTGCC
CCACAGTGCCTGCCTTCCCACCAGATCCCAGACTCCACAAACTCATGGTGCAAACCTTTACCTT
TTTTAAAAAAGATCTTTTCTTATTGCTAATTTATTGTTTCTGGACTTGGGCAGACACTCTGGGT
AATACTTCTCTTGCACCAGACACTGGGTTTTGAGAGTAGGGATACTACCCTGCCCTGGTCCCAG
AGAGGCCCCCAATGGGTGTAGCCCCTTTTCAGAGGACACTGCCTAGGGTGCTTCTCTTTGGAAT
GGACAGACCCACGTGCTCCCATGGGGAGGAGAGGGTCATACTGTCTGCCTCTCTCTGCCCCCAG
TGGGCCATTTGTAGCTCCAGCCCTCCTGCGGGATGGGAGCTCTCCCACATGGTCTCCACCACAG
TTCCTTACCCTCACCAGAACTGCTGCAGAAGATTGGGTCTAATGATTTTAGGCCAAAAAGGCCC
TGTGGTTGGGGGAGGGTCTCTAGGCTGGAATGTTTGCCTCCTCGATGTCCTGTGCTTCCTTGTA
AGCAAGTCAGCAGCTCAGCTGCTCCTGCTGCCATCTGGACTTATTTTATGTCAATTTGTTTATA
AATAAAAACCAATACAGAT

hide sequence

RefSeq Acc Id:

XM_013364414 ⟹ XP_013219868

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,160 - 22,784,398 (-)	NCBI

Sequence:

show sequence

GTTAATAACCATTCTCCTTCTTCTCCCCTCATCAACTTTGCAGATGGAGAAAATAACATACAGA
GAAATTGGCTTGTCAGAAGTCAGAGCAAGATTTTGGCGGATCCAGGGATAAATCCCAAACCTCA
TAACTCCTTAAGCAGTCTTTAGTTCATTGATTATGCAGCCTAGTGTAATAAACTGGAATGAAGT
TAGAAAATACAAATATGGTCACCTATCAGAGTCTGCATCCCAATATCAAGCATCTAGTGCTTTT
TGCATGGCCCAAAGGGGCCCTGTGCTGCTCCACTGCAGAGGAAACTTCAAGAAATGCTGGTTTG
CTACAGTGTTTTAGCTTGTGAGAGTCTCTGGGACCTTCCCTGCTCCATCATGGGGTCACCTCTA
GGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCT
TCAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGCATGAAATTGGAAGCACAGGA
CCCCAGGAACACCACATCCACATGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTCCGC
CTGCGCCTTGATGGTAGTGACAACAAGAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCC
AGCCTGTTGGGAACTGTGAGAAGAATGGGGGTATGCTTCAGCCACCTCTGGGATTTCGGCTGAA
TGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGG
ATTTTCCACAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAAGCTGGAAG
CTGTAGACAGGAAGAATCCTCATTTCATTTGTCCAGCCACTATAGGGGAGGTTCGGGGCTCAGA
GGTGCTTGTCACTTTTGATGGGTGGCGAGGAGCCTTTGATTACTGGTGCCGCTTCGACTCCCGG
GACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGACAATCTACAGCCTCCTGGCACCAAAG
TTGTGATTCCAAAGAATCCCTTCCCTGCGTCTGATGTGAACACTGAGAAGTCCAGCATCCACAG
CAGCACCAAAACTGTCTTGGAGCATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGCGG
GGTCGAACACCCAAGACCCTTATTTCCCATCCCATCTCTACCCCATCCAAGTCAGCTGAATCTT
TGAAATTCCCAAAGAAGAGGGGTCCCAAACCTGGCAGTAAGAGGAAACCTCGGACTTTGCTGAG
CCCACCACCCACCTCACCAACAACCAGCACCCCTGAACCGGATACCAGCACTGTTCCCCAAGAT
GCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAACAAGAATG
GCAGCCCAGGCCCTCACTTAGATAAGAAGAAGATCCAACAGCTCCCTGACCATTTTGGGCCAGC
CCGTGCCTCTGTGGTATTGCAGCAGGCTGTCCAGGCATGCATCGACTGTGCTTATCACCAGAAA
ACTGTCTTCAGCTTCCTCAAACAGGGCCACGGTGGTGAGGTCATCTCAGCCGTGTTTGACCGAG
AACAGCACACCCTCAACCTCCCAGCAGTCAACAGCATCACCTATGTCCTCCGCTTCCTGGAGAA
GCTCTGCCACAACCTTCATAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACTTA
TCACTCACTGCCACAGAGTACAGCCACAGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCT
TGGGGAATAGTCTGGCCCGGTCCTTGGCACCACGCACAGATTCAATGGACTCTACGTTGAATCC
TACCAACCTTGTCAGTACCTCCCAGAATCTTCGAACTTCTGGGTACCGGCCCTTGCTTCCCTCC
TGTGGCCTCCCACAGAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTGTTAAAAG
GATCAAATGAAAGAAGGGGTATGGAATCATTTTGGAAACTAAATCATTCCCCAGGGTCTGACCG
ATACCTGGAAAGCCGGGAAGCCTCTCGACTGAGTAGCCGGGACCCCTCCTCATGGACAGTCGAG
GATGTGATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCATGCTGACCTCTTTCGAA
AACATGAGATCGATGGCAAGGCCCTGCTTCTGCTGCGCAGTGACATGATGATGAAGTATATGGG
TCTAAAGCTGGGGCCTGCACTCAAGCTCTCCTTCCACATTGACCGGCTGAAGCAGGGCAAGTTC
TGAACAGGAGGCACAGCCTAGACAACGGAGTGGTCGGGCAGATGGGGCATTTTTCTCCTTGGAA
GAAGGCTACCAGCCTGCTCCTAGGCACCTCACTGGAGCTCAGGCCACTCCAGGACTCCAGGAGG
CTATGTGGAGCCACCACTGCTACCCCCACCCCTCTTGCCATGATGAGTCCTTCCATGAAGGACC
AAGGAGGGGCAAATATGGGCCTGGGGCTGGCGCTGCTCTTCCCCTCAGCCCTGCCATGGCTCTG
AGGTCCCCTCTATTTATTTTTTAAGCCCAGCTATCCTCTCACCAGGAATTTAGACTGAGCACCG
TCCAAGTGGCAGAGGAAGAGCCCTTGGACCCCCCCTACCCTGCCGCTCTCCTCCTGGGTTTGGT
GTGGCATCCCACTGCCCCACAGTGCCTGCCTTCCCACCAGATCCCAGACTCCACAAACTCATGG
TGCAAACCTTTACCTTTTTTAAAAAAGATCTTTTCTTATTGCTAATTTATTGTTTCTGGACTTG
GGCAGACACTCTGGGTAATACTTCTCTTGCACCAGACACTGGGTTTTGAGAGTAGGGATACTAC
CCTGCCCTGGTCCCAGAGAGGCCCCCAATGGGTGTAGCCCCTTTTCAGAGGACACTGCCTAGGG
TGCTTCTCTTTGGAATGGACAGACCCACGTGCTCCCATGGGGAGGAGAGGGTCATACTGTCTGC
CTCTCTCTGCCCCCAGTGGGCCATTTGTAGCTCCAGCCCTCCTGCGGGATGGGAGCTCTCCCAC
ATGGTCTCCACCACAGTTCCTTACCCTCACCAGAACTGCTGCAGAAGATTGGGTCTAATGATTT
TAGGCCAAAAAGGCCCTGTGGTTGGGGGAGGGTCTCTAGGCTGGAATGTTTGCCTCCTCGATGT
CCTGTGCTTCCTTGTAAGCAAGTCAGCAGCTCAGCTGCTCCTGCTGCCATCTGGACTTATTTTA
TGTCAATTTGTTTATAAATAAAAACCAATACAGAT

hide sequence

RefSeq Acc Id:

XM_013364429 ⟹ XP_013219883

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,160 - 22,784,399 (-)	NCBI

Sequence:

show sequence

GGTTAATAACCATTCTCCTTCTTCTCCCCTCATCAACTTTGCAGATGGAGAAAATAACATACAG
AGAAATTGGCTTGTCAGAAGTCAGAGCAAGATTTTGGCGGATCCAGGGATAAATCCCAAACCTC
ATAACTCCTTAAGCAGTCTTTAGTTCATTGATTATGCAGCCTAGTGTAATAAACTGGAATGAAG
TTAGAAAATACAAATATGGTCACCTATCAGAGTCTGCATCCCAATATCAAGAAACTGGTGACAT
CCTGGAGCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCT
GTCCATTGCTTCAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGCATGAAATTGG
AAGCACAGGACCCCAGGAACACCACATCCACATGTATTGCCACAGTAGTTGGACTGACAGGTGC
CCGCCTCCGCCTGCGCCTTGATGGTAGTGACAACAAGAATGACTTCTGGCGGCTGGTTGACTCA
GCTGAAATCCAGCCTGTTGGGAACTGTGAGAAGAATGGGGGTATGCTTCAGCCACCTCTGGGAT
TTCGGCTGAATGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGC
TCCCATCAGGATTTTCCACAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATG
AAGCTGGAAGCTGTAGACAGGAAGAATCCTCATTTCATTTGTCCAGCCACTATAGGGGAGGTTC
GGGGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGAGCCTTTGATTACTGGTGCCGCTT
CGACTCCCGGGACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGACAATCTACAGCCTCCT
GGCACCAAAGTTGTGATTCCAAAGAATCCCTTCCCTGCGTCTGATGTGAACACTGAGAAGTCCA
GCATCCACAGCAGCACCAAAACTGTCTTGGAGCATCAACCAGGGCAGAGGGGGCGTAAACCAGG
AAAGAAGCGGGGTCGAACACCCAAGACCCTTATTTCCCATCCCATCTCTACCCCATCCAAGTCA
GCTGAATCTTTGAAATTCCCAAAGAAGAGGGGTCCCAAACCTGGCAGTAAGAGGAAACCTCGGA
CTTTGCTGAGCCCACCACCCACCTCACCAACAACCAGCACCCCTGAACCGGATACCAGCACTGT
TCCCCAAGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTG
AACAAGAATGGCAGCCCAGGCCCTCACTTAGATAAGAAGAAGATCCAACAGCTCCCTGACCATT
TTGGGCCAGCCCGTGCCTCTGTGGTATTGCAGCAGGCTGTCCAGGCATGCATCGACTGTGCTTA
TCACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGCCACGGTGGTGAGGTCATCTCAGGTGAA
ACCTTTGTCTTGGGGAATAGTCTGGCCCGGTCCTTGGCACCACGCACAGATTCAATGGACTCTA
CGTTGAATCCTACCAACCTTGTCAGTACCTCCCAGAATCTTCGAACTTCTGGGTACCGGCCCTT
GCTTCCCTCCTGTGGCCTCCCACAGAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGA
GTGTTAAAAGGATCAAATGAAAGAAGGGGTATGGAATCATTTTGGAAACTAAATCATTCCCCAG
GGTCTGACCGATACCTGGAAAGCCGGGAAGCCTCTCGACTGAGTAGCCGGGACCCCTCCTCATG
GACAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCATGCTGAC
CTCTTTCGAAAACATGAGATCGATGGCAAGGCCCTGCTTCTGCTGCGCAGTGACATGATGATGA
AGTATATGGGTCTAAAGCTGGGGCCTGCACTCAAGCTCTCCTTCCACATTGACCGGCTGAAGCA
GGGCAAGTTCTGAACAGGAGGCACAGCCTAGACAACGGAGTGGTCGGGCAGATGGGGCATTTTT
CTCCTTGGAAGAAGGCTACCAGCCTGCTCCTAGGCACCTCACTGGAGCTCAGGCCACTCCAGGA
CTCCAGGAGGCTATGTGGAGCCACCACTGCTACCCCCACCCCTCTTGCCATGATGAGTCCTTCC
ATGAAGGACCAAGGAGGGGCAAATATGGGCCTGGGGCTGGCGCTGCTCTTCCCCTCAGCCCTGC
CATGGCTCTGAGGTCCCCTCTATTTATTTTTTAAGCCCAGCTATCCTCTCACCAGGAATTTAGA
CTGAGCACCGTCCAAGTGGCAGAGGAAGAGCCCTTGGACCCCCCCTACCCTGCCGCTCTCCTCC
TGGGTTTGGTGTGGCATCCCACTGCCCCACAGTGCCTGCCTTCCCACCAGATCCCAGACTCCAC
AAACTCATGGTGCAAACCTTTACCTTTTTTAAAAAAGATCTTTTCTTATTGCTAATTTATTGTT
TCTGGACTTGGGCAGACACTCTGGGTAATACTTCTCTTGCACCAGACACTGGGTTTTGAGAGTA
GGGATACTACCCTGCCCTGGTCCCAGAGAGGCCCCCAATGGGTGTAGCCCCTTTTCAGAGGACA
CTGCCTAGGGTGCTTCTCTTTGGAATGGACAGACCCACGTGCTCCCATGGGGAGGAGAGGGTCA
TACTGTCTGCCTCTCTCTGCCCCCAGTGGGCCATTTGTAGCTCCAGCCCTCCTGCGGGATGGGA
GCTCTCCCACATGGTCTCCACCACAGTTCCTTACCCTCACCAGAACTGCTGCAGAAGATTGGGT
CTAATGATTTTAGGCCAAAAAGGCCCTGTGGTTGGGGGAGGGTCTCTAGGCTGGAATGTTTGCC
TCCTCGATGTCCTGTGCTTCCTTGTAAGCAAGTCAGCAGCTCAGCTGCTCCTGCTGCCATCTGG
ACTTATTTTATGTCAATTTGTTTATAAATAAAAACCAATACAGAT

hide sequence

RefSeq Acc Id:

XM_021736026 ⟹ XP_021591701

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,160 - 22,784,396 (-)	NCBI

Sequence:

show sequence

TAATAACCATTCTCCTTCTTCTCCCCTCATCAACTTTGCAGATGGAGAAAATAACATACAGAGA
AATTGGCTTGTCAGAAGTCAGAGCAAGATTTTGGCGGATCCAGGGATAAATCCCAAACCTCATA
ACTCCTTAAGCAGTCTTTAGTTCATTGATTATGCAGCCTAGTGTAATAAACTGGAATGAAGTTA
GAAAATACAAATATGGTCACCTATCAGAGTCTGCATCCCAATATCAAGAAACTGGTGACATCCT
GGAGCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTC
CATTGCTTCAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGCATGAAATTGGAAG
CACAGGACCCCAGGAACACCACATCCACATGTATTGCCACAGTAGTTGGACTGACAGGTGCCCG
CCTCCGCCTGCGCCTTGATGGTAGTGACAACAAGAATGACTTCTGGCGGCTGGTTGACTCAGCT
GAAATCCAGCCTGTTGGGAACTGTGAGAAGAATGGGGGTATGCTTCAGCCACCTCTGGGATTTC
GGCTGAATGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCC
CATCAGGATTTTCCACAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAAG
CTGGAAGCTGTAGACAGGAAGAATCCTCATTTCATTTGTCCAGCCACTATAGGGGAGGTTCGGG
GCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGAGCCTTTGATTACTGGTGCCGCTTCGA
CTCCCGGGACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGACAATCTACAGCCTCCTGGC
ACCAAAGTTTGTATCTACTTGAACAAGAATGGCAGCCCAGGCCCTCACTTAGATAAGAAGAAGA
TCCAACAGCTCCCTGACCATTTTGGGCCAGCCCGTGCCTCTGTGGTATTGCAGCAGGCTGTCCA
GGCATGCATCGACTGTGCTTATCACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGCCACGGT
GGTGAGGTCATCTCAGCCGTGTTTGACCGAGAACAGCACACCCTCAACCTCCCAGCAGTCAACA
GCATCACCTATGTCCTCCGCTTCCTGGAGAAGCTCTGCCACAACCTTCATAGTGACAATCTGTT
TGGCAACCAGCCCTTTACACAGACTCACTTATCACTCACTGCCACAGAGTACAGCCACAGCCAC
GACAGGTACCTACCAGGTGAAACCTTTGTCTTGGGGAATAGTCTGGCCCGGTCCTTGGCACCAC
GCACAGATTCAATGGACTCTACGTTGAATCCTACCAACCTTGTCAGTACCTCCCAGAATCTTCG
AACTTCTGGGTACCGGCCCTTGCTTCCCTCCTGTGGCCTCCCACAGAGCACTGCCTCAGCTGTG
CGCAGGCTATGCTCCAGGGGAGTGTTAAAAGGATCAAATGAAAGAAGGGGTATGGAATCATTTT
GGAAACTAAATCATTCCCCAGGGTCTGACCGATACCTGGAAAGCCGGGAAGCCTCTCGACTGAG
TAGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGATCCT
CAGCTTGGACCCCATGCTGACCTCTTTCGAAAACATGAGATCGATGGCAAGGCCCTGCTTCTGC
TGCGCAGTGACATGATGATGAAGTATATGGGTCTAAAGCTGGGGCCTGCACTCAAGCTCTCCTT
CCACATTGACCGGCTGAAGCAGGGCAAGTTCTGAACAGGAGGCACAGCCTAGACAACGGAGTGG
TCGGGCAGATGGGGCATTTTTCTCCTTGGAAGAAGGCTACCAGCCTGCTCCTAGGCACCTCACT
GGAGCTCAGGCCACTCCAGGACTCCAGGAGGCTATGTGGAGCCACCACTGCTACCCCCACCCCT
CTTGCCATGATGAGTCCTTCCATGAAGGACCAAGGAGGGGCAAATATGGGCCTGGGGCTGGCGC
TGCTCTTCCCCTCAGCCCTGCCATGGCTCTGAGGTCCCCTCTATTTATTTTTTAAGCCCAGCTA
TCCTCTCACCAGGAATTTAGACTGAGCACCGTCCAAGTGGCAGAGGAAGAGCCCTTGGACCCCC
CCTACCCTGCCGCTCTCCTCCTGGGTTTGGTGTGGCATCCCACTGCCCCACAGTGCCTGCCTTC
CCACCAGATCCCAGACTCCACAAACTCATGGTGCAAACCTTTACCTTTTTTAAAAAAGATCTTT
TCTTATTGCTAATTTATTGTTTCTGGACTTGGGCAGACACTCTGGGTAATACTTCTCTTGCACC
AGACACTGGGTTTTGAGAGTAGGGATACTACCCTGCCCTGGTCCCAGAGAGGCCCCCAATGGGT
GTAGCCCCTTTTCAGAGGACACTGCCTAGGGTGCTTCTCTTTGGAATGGACAGACCCACGTGCT
CCCATGGGGAGGAGAGGGTCATACTGTCTGCCTCTCTCTGCCCCCAGTGGGCCATTTGTAGCTC
CAGCCCTCCTGCGGGATGGGAGCTCTCCCACATGGTCTCCACCACAGTTCCTTACCCTCACCAG
AACTGCTGCAGAAGATTGGGTCTAATGATTTTAGGCCAAAAAGGCCCTGTGGTTGGGGGAGGGT
CTCTAGGCTGGAATGTTTGCCTCCTCGATGTCCTGTGCTTCCTTGTAAGCAAGTCAGCAGCTCA
GCTGCTCCTGCTGCCATCTGGACTTATTTTATGTCAATTTGTTTATAAATAAAAACCAATACAG
AT

hide sequence

RefSeq Acc Id:

XM_040288454 ⟹ XP_040144388

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,462 (-)	NCBI

RefSeq Acc Id:

XM_040288455 ⟹ XP_040144389

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,949,572 (-)	NCBI

RefSeq Acc Id:

XM_040288456 ⟹ XP_040144390

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,576 (-)	NCBI

RefSeq Acc Id:

XM_040288457 ⟹ XP_040144391

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,573 (-)	NCBI

RefSeq Acc Id:

XM_040288458 ⟹ XP_040144392

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,949,572 (-)	NCBI

RefSeq Acc Id:

XM_040288459 ⟹ XP_040144393

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,825,540 - 56,959,573 (-)	NCBI

RefSeq Acc Id:

XM_040288460 ⟹ XP_040144394

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,959,576 (-)	NCBI

RefSeq Acc Id:

XM_040288461 ⟹ XP_040144395

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,818,076 - 56,959,573 (-)	NCBI

RefSeq Acc Id:

XM_040288462 ⟹ XP_040144396

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	56,823,374 - 56,931,040 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013219862	(Get FASTA)	NCBI Sequence Viewer
	XP_013219864	(Get FASTA)	NCBI Sequence Viewer
	XP_013219868	(Get FASTA)	NCBI Sequence Viewer
	XP_013219883	(Get FASTA)	NCBI Sequence Viewer
	XP_021591701	(Get FASTA)	NCBI Sequence Viewer
	XP_040144388	(Get FASTA)	NCBI Sequence Viewer
	XP_040144389	(Get FASTA)	NCBI Sequence Viewer
	XP_040144390	(Get FASTA)	NCBI Sequence Viewer
	XP_040144391	(Get FASTA)	NCBI Sequence Viewer
	XP_040144392	(Get FASTA)	NCBI Sequence Viewer
	XP_040144393	(Get FASTA)	NCBI Sequence Viewer
	XP_040144394	(Get FASTA)	NCBI Sequence Viewer
	XP_040144395	(Get FASTA)	NCBI Sequence Viewer
	XP_040144396	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011742.3
	ENSSTOP00000031016.1
GenBank Protein	KAG3282884	(Get FASTA)	NCBI Sequence Viewer
	KAG3282885	(Get FASTA)	NCBI Sequence Viewer
	KAG3282886	(Get FASTA)	NCBI Sequence Viewer
	KAG3282887	(Get FASTA)	NCBI Sequence Viewer
	KAG3282888	(Get FASTA)	NCBI Sequence Viewer
	KAG3282889	(Get FASTA)	NCBI Sequence Viewer
	KAG3282890	(Get FASTA)	NCBI Sequence Viewer
	KAG3282891	(Get FASTA)	NCBI Sequence Viewer
	KAG3282892	(Get FASTA)	NCBI Sequence Viewer
	KAG3282893	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013219862 ⟸ XM_013364408
- Peptide Label:	isoform X1
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPSVINWNEVRKYKYGHLSESASQYQETGDILELGHFTWDKYLKETCSVPAPVHCFKQSYTPP SNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPVGNCEK NGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPH FICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPF PASDVNTEKSSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISTPSKSAESLKFPKKRG PKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSPGPHLD KKKIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLP AVNSITYVLRFLEKLCHNLHSDNLFGNQPFTQTHLSLTATEYSHSHDRYLPGETFVLGNSLARS LAPRTDSMDSTLNPTNLVSTSQNLRTSGYRPLLPSCGLPQSTASAVRRLCSRGVLKGSNERRGM ESFWKLNHSPGSDRYLESREASRLSSRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKA LLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF hide sequence

RefSeq Acc Id:	XP_013219868 ⟸ XM_013364414
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DBZ4 (UniProtKB/TrEMBL), I3MKD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKL EAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPVGNCEKNGGMLQPPLG FRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEV RGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPFPASDVNTEKS SIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISTPSKSAESLKFPKKRGPKPGSKRKPR TLLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSPGPHLDKKKIQQLPDH FGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLR FLEKLCHNLHSDNLFGNQPFTQTHLSLTATEYSHSHDRYLPGETFVLGNSLARSLAPRTDSMDS TLNPTNLVSTSQNLRTSGYRPLLPSCGLPQSTASAVRRLCSRGVLKGSNERRGMESFWKLNHSP GSDRYLESREASRLSSRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDMMM KYMGLKLGPALKLSFHIDRLKQGKF hide sequence

RefSeq Acc Id:	XP_013219864 ⟸ XM_013364410
- Peptide Label:	isoform X2
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPSVINWNEVRKYKYGHLSESASQYQGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISM KLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPVGNCEKNGGMLQPP LGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIG EVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPFPASDVNTE KSSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISTPSKSAESLKFPKKRGPKPGSKRK PRTLLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSPGPHLDKKKIQQLP DHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYV LRFLEKLCHNLHSDNLFGNQPFTQTHLSLTATEYSHSHDRYLPGETFVLGNSLARSLAPRTDSM DSTLNPTNLVSTSQNLRTSGYRPLLPSCGLPQSTASAVRRLCSRGVLKGSNERRGMESFWKLNH SPGSDRYLESREASRLSSRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDM MMKYMGLKLGPALKLSFHIDRLKQGKF hide sequence

RefSeq Acc Id:	XP_013219883 ⟸ XM_013364429
- Peptide Label:	isoform X6
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPSVINWNEVRKYKYGHLSESASQYQETGDILELGHFTWDKYLKETCSVPAPVHCFKQSYTPP SNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPVGNCEK NGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPH FICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPF PASDVNTEKSSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISTPSKSAESLKFPKKRG PKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSPGPHLD KKKIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISGETFVLGNSLARS LAPRTDSMDSTLNPTNLVSTSQNLRTSGYRPLLPSCGLPQSTASAVRRLCSRGVLKGSNERRGM ESFWKLNHSPGSDRYLESREASRLSSRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKA LLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF hide sequence

RefSeq Acc Id:

XP_021591701 ⟸ XM_021736026

- Peptide Label:

isoform X11

- Sequence:

show sequence

MQPSVINWNEVRKYKYGHLSESASQYQETGDILELGHFTWDKYLKETCSVPAPVHCFKQSYTPP
SNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPVGNCEK
NGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPH
FICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVCIYLNKN
GSPGPHLDKKKIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDR
EQHTLNLPAVNSITYVLRFLEKLCHNLHSDNLFGNQPFTQTHLSLTATEYSHSHDRYLPGETFV
LGNSLARSLAPRTDSMDSTLNPTNLVSTSQNLRTSGYRPLLPSCGLPQSTASAVRRLCSRGVLK
GSNERRGMESFWKLNHSPGSDRYLESREASRLSSRDPSSWTVEDVMQFVREADPQLGPHADLFR
KHEIDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF

hide sequence

RefSeq Acc Id:	XP_040144395 ⟸ XM_040288461
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_040144394 ⟸ XM_040288460
- Peptide Label:	isoform X9
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144390 ⟸ XM_040288456
- Peptide Label:	isoform X4
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144391 ⟸ XM_040288457
- Peptide Label:	isoform X5
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144388 ⟸ XM_040288454
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DBZ4 (UniProtKB/TrEMBL), I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144392 ⟸ XM_040288458
- Peptide Label:	isoform X7
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144389 ⟸ XM_040288455
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DBZ4 (UniProtKB/TrEMBL), I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144396 ⟸ XM_040288462
- Peptide Label:	isoform X12
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144393 ⟸ XM_040288459
- Peptide Label:	isoform X8
- UniProtKB:	I3MKD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000031016 ⟸ ENSSTOT00000040345

RefSeq Acc Id:

ENSSTOP00000011742 ⟸ ENSSTOT00000013101

Protein Domains

SAM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013099	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013101.3	UniProtKB/TrEMBL
	ENSSTOT00000040345.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
	3.90.1150.190	UniProtKB/TrEMBL
InterPro	Mbt	UniProtKB/TrEMBL
	MBT_SCMH1_rpt1	UniProtKB/TrEMBL
	MBT_SCMH1_rpt2	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/TrEMBL
	SAM_Scm-like	UniProtKB/TrEMBL
	SCML2_RBR	UniProtKB/TrEMBL
	SLED	UniProtKB/TrEMBL
	SLED_sf	UniProtKB/TrEMBL
NCBI Gene	Scmh1	ENTREZGENE
PANTHER	POLYCOMB GROUP PROTEIN	UniProtKB/TrEMBL
	POLYCOMB PROTEIN SCMH1	UniProtKB/TrEMBL
Pfam	MBT	UniProtKB/TrEMBL
	RBR	UniProtKB/TrEMBL
	SAM_1	UniProtKB/TrEMBL
	SLED	UniProtKB/TrEMBL
PROSITE	MBT	UniProtKB/TrEMBL
SMART	MBT	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47769	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A0A287DBZ4	ENTREZGENE, UniProtKB/TrEMBL
	I3MKD6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-25	Scmh1	Scm polycomb group protein homolog 1		sex comb on midleg homolog 1 (Drosophila)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD