Ankrd28 (ankyrin repeat domain 28) - Rat Genome Database

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Gene: Ankrd28 (ankyrin repeat domain 28) Ictidomys tridecemlineatus
Analyze
Symbol: Ankrd28
Name: ankyrin repeat domain 28
RGD ID: 12536531
Description: ENCODES a protein that exhibits NF-kappaB binding (inferred); ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain 28, transcript variant X1; ankyrin repeat domain 28, transcript variant X3; ankyrin repeat domain 28, transcript variant X4; ankyrin repeat domain 28, transcript variant X5; ankyrin repeat domain 28, transcript variant X6; ankyrin repeat domain 28, transcript variant X7; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118175,412,381 - 175,592,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,730,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364738,550,851 - 8,730,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ankrd28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118175,412,381 - 175,592,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,730,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364738,550,851 - 8,730,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,667,236 - 15,859,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,667,236 - 15,859,771 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,708,743 - 15,901,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,683,747 - 15,876,057 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,700,252 - 15,813,337NCBI
Celera315,646,877 - 15,840,010 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,643,973 - 15,836,592 (-)NCBIHuRef
CHM1_1315,659,447 - 15,852,157 (-)NCBICHM1_1
T2T-CHM13v2.0315,669,546 - 15,862,982 (-)NCBIT2T-CHM13v2.0
Ankrd28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,418,687 - 31,552,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,420,725 - 31,552,608 (-)EnsemblGRCm39 Ensembl
GRCm381431,698,768 - 31,830,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,698,768 - 31,830,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,513,201 - 32,643,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,529,024 - 30,659,424 (-)NCBIMGSCv36mm8
Celera1427,958,335 - 28,088,802 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Ankrd28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,924,868 - 7,056,593 (-)NCBIGRCr8
mRatBN7.2166,918,487 - 7,050,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,914,336 - 7,050,249 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,816,876 - 7,879,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,818,667 - 7,928,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,737,522 - 7,800,288 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,166,559 - 7,248,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,148,113 - 8,278,476 (+)NCBICelera
Cytogenetic Map16p16NCBI
Ankrd28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,014,583 - 8,197,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554308,014,631 - 8,197,434 (-)NCBIChiLan1.0ChiLan1.0
ANKRD28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,651,816 - 15,845,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,656,580 - 15,850,704 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,591,890 - 15,785,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,928,978 - 16,122,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,932,020 - 16,057,647 (-)Ensemblpanpan1.1panPan2
ANKRD28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12326,824,219 - 27,012,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2326,823,479 - 27,010,908 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2326,799,385 - 26,988,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02327,326,011 - 27,516,914 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2327,326,086 - 27,515,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12327,108,061 - 27,216,255 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,088,868 - 27,278,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,337,409 - 27,526,786 (+)NCBIUU_Cfam_GSD_1.0
ANKRD28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,922,853 - 3,135,709 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,922,855 - 3,135,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,071,720 - 3,208,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,492,121 - 60,681,487 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,491,029 - 60,617,911 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604133,532,424 - 33,721,901 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,155,128 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624821964,162 - 1,155,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005317244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013361725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013361729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013361732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013361735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021731432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040289829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000003123   ⟹   ENSSTOP00000002790
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364738,553,910 - 8,691,863 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000031337   ⟹   ENSSTOP00000031710
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364738,553,910 - 8,677,054 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037181   ⟹   ENSSTOP00000024510
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,673,164 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041705   ⟹   ENSSTOP00000024802
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,730,902 (-)Ensembl
RefSeq Acc Id: XM_005317244   ⟹   XP_005317301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,414,951 - 175,536,026 (-)NCBI
SpeTri2.0NW_0049364738,552,258 - 8,675,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361725   ⟹   XP_013217179
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,414,951 - 175,592,050 (-)NCBI
SpeTri2.0NW_0049364738,553,524 - 8,730,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361729   ⟹   XP_013217183
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,414,951 - 175,592,059 (-)NCBI
SpeTri2.0NW_0049364738,553,524 - 8,730,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289819   ⟹   XP_040145753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,536,026 (-)NCBI
RefSeq Acc Id: XM_040289820   ⟹   XP_040145754
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,536,026 (-)NCBI
RefSeq Acc Id: XM_040289821   ⟹   XP_040145755
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,553,345 (-)NCBI
RefSeq Acc Id: XM_040289822   ⟹   XP_040145756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,535,998 (-)NCBI
RefSeq Acc Id: XM_040289823   ⟹   XP_040145757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,711 - 175,592,059 (-)NCBI
RefSeq Acc Id: XM_040289824   ⟹   XP_040145758
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,711 - 175,592,056 (-)NCBI
RefSeq Acc Id: XM_040289825   ⟹   XP_040145759
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,535,998 (-)NCBI
RefSeq Acc Id: XM_040289827   ⟹   XP_040145761
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,536,037 (-)NCBI
RefSeq Acc Id: XM_040289828   ⟹   XP_040145762
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,413,708 - 175,517,869 (-)NCBI
RefSeq Acc Id: XM_040289829   ⟹   XP_040145763
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,471,580 - 175,536,026 (-)NCBI
RefSeq Acc Id: XR_002484773
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118175,412,381 - 175,536,026 (-)NCBI
SpeTri2.0NW_0049364738,550,851 - 8,674,804 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013217179   ⟸   XM_013361725
- Peptide Label: isoform X3
- UniProtKB: A0A287CU40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013217183   ⟸   XM_013361729
- Peptide Label: isoform X4
- UniProtKB: I3M1Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317301   ⟸   XM_005317244
- Peptide Label: isoform X2
- UniProtKB: A0A287CT52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040145755   ⟸   XM_040289821
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145761   ⟸   XM_040289827
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145754   ⟸   XM_040289820
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145753   ⟸   XM_040289819
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040145759   ⟸   XM_040289825
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145756   ⟸   XM_040289822
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145762   ⟸   XM_040289828
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040145757   ⟸   XM_040289823
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145758   ⟸   XM_040289824
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145763   ⟸   XM_040289829
- Peptide Label: isoform X7
RefSeq Acc Id: ENSSTOP00000002790   ⟸   ENSSTOT00000003123
RefSeq Acc Id: ENSSTOP00000024802   ⟸   ENSSTOT00000041705
RefSeq Acc Id: ENSSTOP00000031710   ⟸   ENSSTOT00000031337
RefSeq Acc Id: ENSSTOP00000024510   ⟸   ENSSTOT00000037181


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003112 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003123.3 UniProtKB/TrEMBL
  ENSSTOT00000031337.1 UniProtKB/TrEMBL
  ENSSTOT00000037181.1 UniProtKB/TrEMBL
  ENSSTOT00000041705.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ankrd28 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 42 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A287CT52 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CU40 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DDR3_ICTTR UniProtKB/TrEMBL
  I3M1Q2 ENTREZGENE, UniProtKB/TrEMBL