Zbtb40 (zinc finger and BTB domain containing 40) - Rat Genome Database

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Gene: Zbtb40 (zinc finger and BTB domain containing 40) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb40
Name: zinc finger and BTB domain containing 40
RGD ID: 12531822
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN DNA damage response (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,023,980 - 42,103,492 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364747,848,750 - 7,928,396 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364747,848,735 - 7,926,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,023,980 - 42,103,492 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364747,848,750 - 7,928,396 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364747,848,735 - 7,926,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,428,909 - 22,531,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,428,838 - 22,531,157 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,778,344 - 22,857,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,650,931 - 22,730,237 (+)NCBINCBI36Build 36hg18NCBI36
Celera121,101,713 - 21,181,052 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,021,764 - 21,101,066 (+)NCBIHuRef
CHM1_1122,890,783 - 22,970,063 (+)NCBICHM1_1
T2T-CHM13v2.0122,252,494 - 22,354,859 (+)NCBIT2T-CHM13v2.0
Zbtb40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,707,043 - 136,776,129 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,707,043 - 136,776,112 (-)EnsemblGRCm39 Ensembl
GRCm384136,979,732 - 137,048,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,979,732 - 137,048,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,535,647 - 136,604,610 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364136,251,808 - 136,320,771 (-)NCBIMGSCv36mm8
MGSCv364134,569,260 - 134,637,170 (-)NCBIMGSCv36mm8
Celera4135,187,888 - 135,256,112 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.05NCBI
Zbtb40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,499,952 - 154,569,390 (-)NCBIGRCr8
mRatBN7.25149,216,496 - 149,283,746 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5149,219,677 - 149,254,415 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,917,511 - 151,981,564 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,691,798 - 153,755,851 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,673,805 - 153,737,858 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05155,343,823 - 155,411,086 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,346,965 - 155,381,732 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,106,436 - 159,175,098 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,748,784 - 155,813,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,758,980 - 155,793,509 (-)NCBI
Celera5147,617,373 - 147,681,459 (-)NCBICelera
Cytogenetic Map5q36NCBI
Zbtb40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554522,632,597 - 2,672,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,597,020 - 2,672,496 (+)NCBIChiLan1.0ChiLan1.0
ZBTB40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21204,418,347 - 204,498,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,524,065 - 203,635,502 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,635,197 - 21,714,180 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,584,740 - 22,663,717 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,622,663 - 22,658,963 (+)Ensemblpanpan1.1panPan2
ZBTB40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,767,650 - 76,841,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,769,571 - 76,818,727 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,275,160 - 73,345,475 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,329,386 - 77,399,497 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,326,001 - 77,399,433 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,150,283 - 74,220,315 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,155,205 - 75,228,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,162,429 - 76,232,539 (-)NCBIUU_Cfam_GSD_1.0
ZBTB40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,450,052 - 80,485,378 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,419,831 - 80,488,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,508,302 - 74,512,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120110,133,981 - 110,213,155 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20110,133,532 - 110,213,153 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,099,757 - 6,179,544 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,198,213 - 7,275,021 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247647,198,964 - 7,268,544 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027530   ⟹   ENSSTOP00000015335
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364747,848,750 - 7,928,396 (+)Ensembl
RefSeq Acc Id: XM_005317564   ⟹   XP_005317621
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,023,980 - 42,103,492 (+)NCBI
SpeTri2.0NW_0049364747,848,735 - 7,926,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288080   ⟹   XP_040144014
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505842,024,460 - 42,103,492 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005317621 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144014 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015335.2
Reference Protein Sequences
RefSeq Acc Id: XP_005317621   ⟸   XM_005317564
- UniProtKB: I3MT90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144014   ⟸   XM_040288080
- UniProtKB: I3MT90 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015335   ⟸   ENSSTOT00000027530
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009598 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027530.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  ZBTB40 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb40 ENTREZGENE
PANTHER PTHR24394:SF0 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MT90 ENTREZGENE, UniProtKB/TrEMBL