Abcb8 (ATP binding cassette subfamily B member 8) - Rat Genome Database

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Gene: Abcb8 (ATP binding cassette subfamily B member 8) Ictidomys tridecemlineatus
Analyze
Symbol: Abcb8
Name: ATP binding cassette subfamily B member 8
RGD ID: 12531425
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN cell volume homeostasis (inferred); mitochondrial potassium ion transmembrane transport (inferred); potassium ion transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); FOUND IN mitochondrial ATP-gated potassium channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family B member 8, mitochondrial; mitochondrial potassium channel ATP-binding subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,428,688 - 6,447,626 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,455,386 - 6,475,171 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,456,182 - 6,471,377 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcb8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,428,688 - 6,447,626 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,455,386 - 6,475,171 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,456,182 - 6,471,377 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCB8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,028,450 - 151,047,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,028,422 - 151,047,782 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,725,537 - 150,744,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,356,443 - 150,375,802 (+)NCBINCBI36Build 36hg18NCBI36
Build 347150,163,184 - 150,180,300NCBI
Celera7145,282,807 - 145,302,178 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,537,846 - 144,557,205 (+)NCBIHuRef
CHM1_17150,733,860 - 150,753,217 (+)NCBICHM1_1
T2T-CHM13v2.07152,201,535 - 152,220,870 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,055,049 - 150,074,408 (+)NCBI
Abcb8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,598,679 - 24,617,757 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,598,661 - 24,615,052 (+)EnsemblGRCm39 Ensembl
GRCm38524,393,681 - 24,412,759 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,393,663 - 24,410,054 (+)EnsemblGRCm38mm10GRCm38
MGSCv37523,899,974 - 23,915,765 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,903,761 - 23,920,012 (+)NCBIMGSCv36mm8
Celera521,343,907 - 21,359,696 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.57NCBI
Abcb8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,660,716 - 11,676,030 (-)NCBIGRCr8
mRatBN7.2410,766,206 - 10,783,598 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,768,281 - 10,783,589 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,915,187 - 15,929,761 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,735,380 - 11,749,954 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0410,087,164 - 10,101,738 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,296,538 - 7,311,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,296,209 - 7,311,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,307,902 - 7,323,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,133,928 - 6,148,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.146,133,927 - 6,148,509 (-)NCBI
Celera46,383,479 - 6,398,060 (-)NCBICelera
Cytogenetic Map4q11NCBI
Abcb8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,468,855 - 5,484,810 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,468,855 - 5,485,568 (+)NCBIChiLan1.0ChiLan1.0
ABCB8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,449,585 - 187,467,478 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,459,849 - 39,480,013 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,614,508 - 142,634,600 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,768,766 - 154,787,318 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,768,766 - 154,787,318 (+)Ensemblpanpan1.1panPan2
ABCB8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,082,866 - 15,098,928 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,082,917 - 15,096,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,691,137 - 15,706,215 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,805,113 - 16,820,196 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,805,126 - 16,819,985 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,177,557 - 15,192,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,759,004 - 15,773,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,809,718 - 15,824,796 (+)NCBIUU_Cfam_GSD_1.0
ABCB8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,178,554 - 6,197,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,178,550 - 6,197,012 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,548,585 - 6,567,048 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCB8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,209,637 - 119,226,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,209,675 - 119,229,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,180,020 - 15,197,336 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcb8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,572,365 - 5,588,401 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,574,264 - 5,588,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000000899   ⟹   ENSSTOP00000000808
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365276,455,386 - 6,475,171 (+)Ensembl
RefSeq Acc Id: XM_005326663   ⟹   XP_005326720
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,430,134 - 6,447,255 (-)NCBI
SpeTri2.0NW_0049365276,456,182 - 6,471,377 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040291269   ⟹   XP_040147203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,428,688 - 6,447,256 (-)NCBI
RefSeq Acc Id: XM_040291270   ⟹   XP_040147204
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,430,183 - 6,447,626 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005326720 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147203 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147204 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000808.2
GenBank Protein KAG3277215 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326720   ⟸   XM_005326663
- Peptide Label: isoform X1
- UniProtKB: I3LXJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147203   ⟸   XM_040291269
- Peptide Label: isoform X1
- UniProtKB: I3LXJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147204   ⟸   XM_040291270
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000000808   ⟸   ENSSTOT00000000899

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000898 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000899.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Type_1_exporter UniProtKB/TrEMBL
NCBI Gene Abcb8 ENTREZGENE
PANTHER MITOCHONDRIAL POTASSIUM CHANNEL ATP-BINDING SUBUNIT UniProtKB/TrEMBL
  PTHR24221 UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PIRSF ABC_prm/ATPase_B UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt I3LXJ6 ENTREZGENE, UniProtKB/TrEMBL