Dmtf1 (cyclin D binding myb like transcription factor 1)

Gene: Dmtf1 (cyclin D binding myb like transcription factor 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Dmtf1

Name:

cyclin D binding myb like transcription factor 1

RGD ID:

12527092

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cyclin D binding myb like transcription factor 1, transcript variant X1; cyclin D binding myb like transcription factor 1, transcript variant X2; cyclin D binding myb like transcription factor 1, transcript variant X3; cyclin-D-binding Myb-like transcription factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	26,361,442 - 26,405,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936763	1,593,428 - 1,639,881 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936763	1,595,291 - 1,639,928 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dmtf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	26,361,442 - 26,405,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936763	1,593,428 - 1,639,881 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936763	1,595,291 - 1,639,928 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DMTF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	87,152,453 - 87,196,325 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	87,152,409 - 87,196,337 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	86,781,769 - 86,825,641 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	86,619,860 - 86,663,584 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	86,426,574 - 86,470,295	NCBI
Celera	7	81,486,557 - 81,530,527 (+)	NCBI		Celera
Cytogenetic Map	7	q21.12	NCBI
HuRef	7	81,392,670 - 81,436,634 (+)	NCBI		HuRef
CHM1_1	7	86,711,722 - 86,755,672 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	88,402,370 - 88,446,262 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	86,113,189 - 86,157,158 (+)	NCBI

Dmtf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	9,168,868 - 9,211,782 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	9,168,801 - 9,211,776 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	9,118,868 - 9,161,806 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	9,118,801 - 9,161,776 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	9,118,868 - 9,161,776 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	9,124,807 - 9,167,724 (-)	NCBI		MGSCv36	mm8
Celera	5	9,035,220 - 9,078,128 (-)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	3.69	NCBI

Dmtf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	25,864,891 - 25,905,916 (+)	NCBI		GRCr8
mRatBN7.2	4	24,909,937 - 24,950,786 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	24,910,534 - 24,950,967 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	29,927,312 - 29,967,527 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	25,853,579 - 25,893,793 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	24,228,327 - 24,268,650 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	21,862,297 - 21,902,798 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	21,862,313 - 21,902,762 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	21,793,677 - 21,834,162 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	21,329,397 - 21,369,691 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	21,366,830 - 21,367,402 (+)	NCBI
Celera	4	20,407,932 - 20,448,234 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

Dmtf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955621	50,457 - 95,460 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955621	50,457 - 95,460 (-)	NCBI	ChiLan1.0	ChiLan1.0

DMTF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	105,026,940 - 105,086,232 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	153,291,634 - 153,343,711 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	79,135,090 - 79,178,980 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	92,792,107 - 92,836,607 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	92,792,934 - 92,836,607 (+)	Ensembl	panpan1.1		panPan2

DMTF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	13,336,316 - 13,378,231 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	13,336,426 - 13,377,257 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	12,946,414 - 12,949,012 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	13,099,288 - 13,143,604 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	13,099,343 - 13,143,603 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	13,303,218 - 13,347,553 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	13,028,910 - 13,073,247 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	13,312,537 - 13,356,648 (+)	NCBI		UU_Cfam_GSD_1.0

DMTF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	93,416,455 - 93,463,031 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	93,416,451 - 93,463,129 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	102,896,729 - 102,941,820 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DMTF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	61,744,438 - 61,789,032 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	61,745,619 - 61,787,044 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	42,267,838 - 42,313,042 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dmtf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	34,596,960 - 34,635,809 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	34,594,204 - 34,635,809 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005736415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010368 ⟹ ENSSTOP00000009305

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936763	1,596,541 - 1,629,862 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033013 ⟹ ENSSTOP00000030948

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936763	1,593,428 - 1,639,881 (-)	Ensembl

RefSeq Acc Id:

XM_005340015 ⟹ XP_005340072

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	26,361,454 - 26,405,931 (+)	NCBI
SpeTri2.0	NW_004936763	1,595,291 - 1,639,927 (-)	NCBI

Sequence:

show sequence

TTTCCGGTGGCTCGTTGCGTTCGCTCACTCCAGCTGCAGCCACTCTCGCCCGTGGCTGCTTCCT
CCATCCTGGTATTTTTTGGAGCCTCCATCCTGGTTCTTCCAAAGTGCCCGGACCCAAAACAGGA
ATGTTGCAGAACATGGGGGAGAAACAATCTGGATAACATGAAAGTGATGCGGCTGGATAAGGGA
AGGCAACTTGATTCTGTGGGAAGGGCTATAGCTGATCCAACCGTTGTTTAGATTTGAGTATGAG
CACAGTTGAAGAGGATTCTGACACAGTAACAGTAGAAACTGTGAACTCTGTGACATTGACTCAG
GACACAGAAGGGAACCTCATTCTTCATTGCCCTCAGAATGAAGCTGATGAAATAGACTCAGAAG
ATAGTACTGAACCTCCACATAAGAGACTTTGTTTGTCCTCTGAGGATGATCAGAGTATTGATGA
TTCTACTCCTTGCATATCAGTTGTTGCGCTCCCACTTTCAGAAAATGATCAGAGCTTTGAGGTG
ACTATGACCGCAACCACAGAAGTGGCAGATGATGAGATTACTGAGGGAACGGTGACACAGATCC
AGATTTTACAGAATGAACAACTAGATGAAATATCTCCTTTGGGTAATGAGGAAGTTTCAGCAGT
TAGCCAGGCTTGGTTTACAACTAAAGAAGATAAGGATTCTCTAACTAACAAAGGACATAAATGG
AAGCAGGGGATGTGGTCAAAGGAAGAAATTGATATTTTGATGAACAATATTGAACGCTATCTGA
AGGCACGCGGAATAAAAGATGCCACAGAAATCATCTTTGAGATGTCAAAAGACGAAAGAAAAGA
TTTCTACAGGACTATAGCATGGGGTCTGAACCGGTCTTTGTTTGCAGTTTATAGAAGAGTGCTT
CGCATGTATGATGACAGAAACCATGTGGGAAAATATACTCCTGAAGAAATTGAGAAACTCAAGG
AGCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCCCTAGGAAGAAGTGCATC
TTCCGTCAAAGATCGGTGCCGACTGATGAAGGATACTTGCAACACAGGGAAATGGACAGAAGAA
GAAGAAAAGAGACTTGCAGAGGTGGTTCATGAGTTGACGAGCACTGAGCCAGGTGACATAGTCA
CACAGGGTGTGTCTTGGGCAGCTGTGGCTGAACGTGTGGGTACCCGCTCAGAAAAGCAGTGTCG
TTCTAAGTGGCTCAACTACTTGAACTGGAAACAGAGTGGGGGTACTGAGTGGACCAAGGAAGAT
GAAATCAATCTCATCCTCAGGATAGCAGAGCTTGATGTAGCTGATGAAAATGACATAAACTGGG
ATCTGTTAGCTGAGGGATGGAGCAGTGTCCGTTCACCACAGTGGCTTCGAAGTAAATGGTGGAC
CATCAAAAGGCAAATTGCAAATCATAAGGATGTTTCATTCCCTGTCTTAATAAAAGGTCTTAAA
CAGTTACATGAGAACCAAAAAAACAACCCAACACTTTTGGAGAATAAATCAGGATCTGGAGTTC
CAAACAGTAATTCCAATTCCAGTGTACAGCATGTTCAGATCAGAGTTGCCCGGTTGGAAGATAA
TACAGCCATCTCTCCAAGTCCTATGACAGCGTTGCAGATTCCAGTTCAGATCACCCATGTCTCT
TCAACAGACTCCCCTGCTGCTACTGTTGACTCAGAAACAATAACACTAAACAGTGGAACACTAC
AGACATTTGAGATCCTTCCATCTTTCCATTTACAGCCCACTGGCACTCCAGGCACCTACCTACT
TCAGACAAGTTCAAGTCAAGGCCTTCCCCTAACTCTGACTGCTAGTCCCACTGTAACCCTGACA
GCTGCTGCTCCTGCTTCTCCAGAACAGATCATTGTTCATGCTTTATCCCCAGAACATCTGTTGA
ACACAAGTGACAGTGTCACAGTGCAATGTCACACACCAAGAGTCATCATTCAGACTGTTGCTAC
AGAGGACATCACTTCTTCCATATCCCAAGCGGAACTGACAGTAGATAGTGATATTCAGTCATCT
GATTTCCCTGAGCCTCCAGATGCACTAGAAGCAGACACTTTCCCAGATGAAATTCATCAGCCTA
AGATGACTATAGAGCCATCATTTAATGATGCTCATGTATCCAAATTCAGTGACCAAAATAGCAC
AGAACTGATGAACAGTGTTATGGTCAGAACAGAAGAAGAAATCTCTGACACCGACCTTAAACAA
GAAGAATCCCCCTCTGATTTAGCCAGTGCTTATGTTACTGAGGACTTAGAGTCACCCACCATCG
TAGAACAAGTTGATCAAACAACTATTGATGACGAAACAATACTTATCGTTCCTTCACCACACAG
CTTTATCCAGGCATCTGATGTTATTGATACTGAATCTGTCTTGCCTTTGACAACACTAACAGAT
CCCATACTCCAACATCATCAGGAAGAATCAAACATCATTGGATCATCTTTGGGCAGTCCTGTTT
CTGAAGATTCAAAGGATGTTGAGGATTTGGTAAATTGTCATTAGTTCATTCTTAGAAACAGGTA
GTTAAAGCAAAGAAGCCACACTGTTAATTATAATATCTCCAAAGAAATAGGAGCAACCTCCCTT
TTACCATTCCTCTGGCTTTTAAATAGCTACAATGCTTAAGCCATGCACATTGTTGCTGCTATGA
TTTTTTACCTCCTTTTAAGTATATCTGAGGTCCAGTTTAATGACAGTGTGTAGGTGAGTAGAAT
CTGGAAGATTTAACTGCACAGATCCTTGTGTTTACTGTTAATTGTCAGGACAGAATTTCATTTA
CTCAGCTACTGAGAAGTTTTTTTAAATCACCAAAGCAGTAATATTCATCTCTGCAGATAAACAA
TGGCACTCTTAACATTCTCAAGTAGGCCTGGTTGTATTTCAGAGAAGTCATATCAACATGGTCT
AGAGCTATCAATGACCTTCTTCAAAAAGATTAAATAGTATTGAGCCTTGACCAGCATAAAATAC
AGAGACCTAAGATAATTGTGTTGCGGTTACTTTTGGTTAACCCATTGCTGGCAGTGGGAGCTGG
TTCAGGCAGGGTAAAGAGGACAGCATTAGAGTCAAGAAAATTCACTACAGGTTTTTTATTACTT
TTAAAGGGAATATGGGTAAGAGTAGTAAACAACCCACTGGTAACTAAGCAGTTTTCACCCCCTC
ATCAGAAACCACTGTTATTAGTTTACAGAGTTAGCACTTTGAAGTAAAATTAAACCAAATATGG
AAAGAGATAATATCCCCAATACCATGACTGTTTATTACATGTTTTACGACATAGACTATCCAGA
AAATATTTGAGGGGGTATCAGAGTTTGCCATTCACAGGTTAGTGCACTAACTGGTGGAGGTACA
ATATAACTGCTCCCTCTCCAGCAATTTTTAAAAACAAAATAAAATTTGCTTCTGTAACAAAAGG
AAATAAATCAAGAGTCATTCCTACTAGAGAAGGGTTAAGCCAAAACTAGCCTCTAGGGCTTTAA
TGAATATGACCCCTATAGAAAAGTCACAAAAAAAAACTTGTATAAATTATTTTATTTATTATTG
TAATTAGATCTTCACAATCAAAGTTGTCTTTTCACTGTCTGTGTTTTGTTAACGTGAAATTGTA
GTTATAAGCAAAAGTTGGTTGCCTAGGGAACAATAATTGTATATTCACTTTAACAGAAATAAAA
GAATATTTGTCTTAAAATGCAAGATTTTGAGCGTTTGCCATGCAATTGTAAAAAATAATAATAA
TTTCAAAGTGAAAA

hide sequence

RefSeq Acc Id:

XM_013365051 ⟹ XP_013220505

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	26,361,454 - 26,405,931 (+)	NCBI
SpeTri2.0	NW_004936763	1,595,291 - 1,639,928 (-)	NCBI

Sequence:

show sequence

GTTTCCGGTGGCTCGTTGCGTTCGCTCACTCCAGCTGCAGCCACTCTCGCCCGTGGCTGCTTCC
TCCATCCTGGTATTTTTTGGAGCCTCCATCCTGGTTCTTCCAAAGTGCCCGGACCCAAAACAGG
AATGTTGCAGAACATGGGGGAGAAACAATCTGGATAACATGAAAGTGATGCGGCTGGATAAGGG
AAGGCAACTTGATTCTGTGGGAAGGGCTATAGCTGATCCAACCGTTGTTTAGATTTGAGTATGA
GCACAGTTGAAGAGGATTCTGACACAGTAACAGTAGAAACTGTGAACTCTGTGACATTGACTCA
GGACACAGAAGGGAACCTCATTCTTCATTGCCCTCAGAATGTTTCAGAAAATGATCAGAGCTTT
GAGGTGACTATGACCGCAACCACAGAAGTGGCAGATGATGAGATTACTGAGGGAACGGTGACAC
AGATCCAGATTTTACAGAATGAACAACTAGATGAAATATCTCCTTTGGGTAATGAGGAAGTTTC
AGCAGTTAGCCAGGCTTGGTTTACAACTAAAGAAGATAAGGATTCTCTAACTAACAAAGGACAT
AAATGGAAGCAGGGGATGTGGTCAAAGGAAGAAATTGATATTTTGATGAACAATATTGAACGCT
ATCTGAAGGCACGCGGAATAAAAGATGCCACAGAAATCATCTTTGAGATGTCAAAAGACGAAAG
AAAAGATTTCTACAGGACTATAGCATGGGGTCTGAACCGGTCTTTGTTTGCAGTTTATAGAAGA
GTGCTTCGCATGTATGATGACAGAAACCATGTGGGAAAATATACTCCTGAAGAAATTGAGAAAC
TCAAGGAGCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCCCTAGGAAGAAG
TGCATCTTCCGTCAAAGATCGGTGCCGACTGATGAAGGATACTTGCAACACAGGGAAATGGACA
GAAGAAGAAGAAAAGAGACTTGCAGAGGTGGTTCATGAGTTGACGAGCACTGAGCCAGGTGACA
TAGTCACACAGGGTGTGTCTTGGGCAGCTGTGGCTGAACGTGTGGGTACCCGCTCAGAAAAGCA
GTGTCGTTCTAAGTGGCTCAACTACTTGAACTGGAAACAGAGTGGGGGTACTGAGTGGACCAAG
GAAGATGAAATCAATCTCATCCTCAGGATAGCAGAGCTTGATGTAGCTGATGAAAATGACATAA
ACTGGGATCTGTTAGCTGAGGGATGGAGCAGTGTCCGTTCACCACAGTGGCTTCGAAGTAAATG
GTGGACCATCAAAAGGCAAATTGCAAATCATAAGGATGTTTCATTCCCTGTCTTAATAAAAGGT
CTTAAACAGTTACATGAGAACCAAAAAAACAACCCAACACTTTTGGAGAATAAATCAGGATCTG
GAGTTCCAAACAGTAATTCCAATTCCAGTGTACAGCATGTTCAGATCAGAGTTGCCCGGTTGGA
AGATAATACAGCCATCTCTCCAAGTCCTATGACAGCGTTGCAGATTCCAGTTCAGATCACCCAT
GTCTCTTCAACAGACTCCCCTGCTGCTACTGTTGACTCAGAAACAATAACACTAAACAGTGGAA
CACTACAGACATTTGAGATCCTTCCATCTTTCCATTTACAGCCCACTGGCACTCCAGGCACCTA
CCTACTTCAGACAAGTTCAAGTCAAGGCCTTCCCCTAACTCTGACTGCTAGTCCCACTGTAACC
CTGACAGCTGCTGCTCCTGCTTCTCCAGAACAGATCATTGTTCATGCTTTATCCCCAGAACATC
TGTTGAACACAAGTGACAGTGTCACAGTGCAATGTCACACACCAAGAGTCATCATTCAGACTGT
TGCTACAGAGGACATCACTTCTTCCATATCCCAAGCGGAACTGACAGTAGATAGTGATATTCAG
TCATCTGATTTCCCTGAGCCTCCAGATGCACTAGAAGCAGACACTTTCCCAGATGAAATTCATC
AGCCTAAGATGACTATAGAGCCATCATTTAATGATGCTCATGTATCCAAATTCAGTGACCAAAA
TAGCACAGAACTGATGAACAGTGTTATGGTCAGAACAGAAGAAGAAATCTCTGACACCGACCTT
AAACAAGAAGAATCCCCCTCTGATTTAGCCAGTGCTTATGTTACTGAGGACTTAGAGTCACCCA
CCATCGTAGAACAAGTTGATCAAACAACTATTGATGACGAAACAATACTTATCGTTCCTTCACC
ACACAGCTTTATCCAGGCATCTGATGTTATTGATACTGAATCTGTCTTGCCTTTGACAACACTA
ACAGATCCCATACTCCAACATCATCAGGAAGAATCAAACATCATTGGATCATCTTTGGGCAGTC
CTGTTTCTGAAGATTCAAAGGATGTTGAGGATTTGGTAAATTGTCATTAGTTCATTCTTAGAAA
CAGGTAGTTAAAGCAAAGAAGCCACACTGTTAATTATAATATCTCCAAAGAAATAGGAGCAACC
TCCCTTTTACCATTCCTCTGGCTTTTAAATAGCTACAATGCTTAAGCCATGCACATTGTTGCTG
CTATGATTTTTTACCTCCTTTTAAGTATATCTGAGGTCCAGTTTAATGACAGTGTGTAGGTGAG
TAGAATCTGGAAGATTTAACTGCACAGATCCTTGTGTTTACTGTTAATTGTCAGGACAGAATTT
CATTTACTCAGCTACTGAGAAGTTTTTTTAAATCACCAAAGCAGTAATATTCATCTCTGCAGAT
AAACAATGGCACTCTTAACATTCTCAAGTAGGCCTGGTTGTATTTCAGAGAAGTCATATCAACA
TGGTCTAGAGCTATCAATGACCTTCTTCAAAAAGATTAAATAGTATTGAGCCTTGACCAGCATA
AAATACAGAGACCTAAGATAATTGTGTTGCGGTTACTTTTGGTTAACCCATTGCTGGCAGTGGG
AGCTGGTTCAGGCAGGGTAAAGAGGACAGCATTAGAGTCAAGAAAATTCACTACAGGTTTTTTA
TTACTTTTAAAGGGAATATGGGTAAGAGTAGTAAACAACCCACTGGTAACTAAGCAGTTTTCAC
CCCCTCATCAGAAACCACTGTTATTAGTTTACAGAGTTAGCACTTTGAAGTAAAATTAAACCAA
ATATGGAAAGAGATAATATCCCCAATACCATGACTGTTTATTACATGTTTTACGACATAGACTA
TCCAGAAAATATTTGAGGGGGTATCAGAGTTTGCCATTCACAGGTTAGTGCACTAACTGGTGGA
GGTACAATATAACTGCTCCCTCTCCAGCAATTTTTAAAAACAAAATAAAATTTGCTTCTGTAAC
AAAAGGAAATAAATCAAGAGTCATTCCTACTAGAGAAGGGTTAAGCCAAAACTAGCCTCTAGGG
CTTTAATGAATATGACCCCTATAGAAAAGTCACAAAAAAAAACTTGTATAAATTATTTTATTTA
TTATTGTAATTAGATCTTCACAATCAAAGTTGTCTTTTCACTGTCTGTGTTTTGTTAACGTGAA
ATTGTAGTTATAAGCAAAAGTTGGTTGCCTAGGGAACAATAATTGTATATTCACTTTAACAGAA
ATAAAAGAATATTTGTCTTAAAATGCAAGATTTTGAGCGTTTGCCATGCAATTGTAAAAAATAA
TAATAATTTCAAAGTGAAAA

hide sequence

RefSeq Acc Id:

XR_005736415

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	26,361,442 - 26,404,341 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005340072	(Get FASTA)	NCBI Sequence Viewer
	XP_013220505	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009305.3
	ENSSTOP00000030948.1
GenBank Protein	KAG3277518	(Get FASTA)	NCBI Sequence Viewer
	KAG3277519	(Get FASTA)	NCBI Sequence Viewer
	KAG3277520	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013220505 ⟸ XM_013365051
- Peptide Label:	isoform X2
- UniProtKB:	I3MFC9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTVEEDSDTVTVETVNSVTLTQDTEGNLILHCPQNVSENDQSFEVTMTATTEVADDEITEGTV TQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIE RYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRSLFAVYRRVLRMYDDRNHVGKYTPEEIE KLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPG DIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADEND INWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKSG SGVPNSNSNSSVQHVQIRVARLEDNTAISPSPMTALQIPVQITHVSSTDSPAATVDSETITLNS GTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPE HLLNTSDSVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIQSSDFPEPPDALEADTFPDEI HQPKMTIEPSFNDAHVSKFSDQNSTELMNSVMVRTEEEISDTDLKQEESPSDLASAYVTEDLES PTIVEQVDQTTIDDETILIVPSPHSFIQASDVIDTESVLPLTTLTDPILQHHQEESNIIGSSLG SPVSEDSKDVEDLVNCH hide sequence

RefSeq Acc Id:	XP_005340072 ⟸ XM_005340015
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DBN2 (UniProtKB/TrEMBL), I3MFC9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTVEEDSDTVTVETVNSVTLTQDTEGNLILHCPQNEADEIDSEDSTEPPHKRLCLSSEDDQSI DDSTPCISVVALPLSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVS AVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDER KDFYRTIAWGLNRSLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRS ASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQ CRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKW WTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKSGSGVPNSNSNSSVQHVQIRVARLE DNTAISPSPMTALQIPVQITHVSSTDSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTY LLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDSVTVQCHTPRVIIQTV ATEDITSSISQAELTVDSDIQSSDFPEPPDALEADTFPDEIHQPKMTIEPSFNDAHVSKFSDQN STELMNSVMVRTEEEISDTDLKQEESPSDLASAYVTEDLESPTIVEQVDQTTIDDETILIVPSP HSFIQASDVIDTESVLPLTTLTDPILQHHQEESNIIGSSLGSPVSEDSKDVEDLVNCH hide sequence

RefSeq Acc Id:

ENSSTOP00000030948 ⟸ ENSSTOT00000033013

RefSeq Acc Id:

ENSSTOP00000009305 ⟸ ENSSTOT00000010368

Protein Domains

HTH myb-type Myb-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010351	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010368.3	UniProtKB/TrEMBL
	ENSSTOT00000033013.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	DMTF1_N	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Myb_dom	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
NCBI Gene	Dmtf1	ENTREZGENE
PANTHER	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	UniProtKB/TrEMBL
	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	UniProtKB/TrEMBL
Pfam	DMTF1_N	UniProtKB/TrEMBL
	Myb_DNA-binding	UniProtKB/TrEMBL
PROSITE	HTH_MYB	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A287DBN2	ENTREZGENE, UniProtKB/TrEMBL
	I3MFC9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar