Jmjd7 (jumonji domain containing 7)

Gene: Jmjd7 (jumonji domain containing 7) Ictidomys tridecemlineatus

Analyze

Symbol:

Jmjd7

Name:

jumonji domain containing 7

RGD ID:

12521206

Description:

ENCODES a protein that exhibits aminopeptidase activity (inferred); endopeptidase activity (inferred); histone H3K36 demethylase activity (inferred); INVOLVED IN chromatin remodeling (inferred); wybutosine biosynthetic process (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7; jmjC domain-containing protein 7; jumonji domain containing 7, transcript variant X1; jumonji domain containing 7, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	87,287,976 - 87,295,162 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	5,136,043 - 5,143,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	5,136,014 - 5,143,191 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

wybutosine biosynthetic process (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

aminopeptidase activity (IEA)

endopeptidase activity (IEA)

histone H3K36 demethylase activity (IEA)

methylated histone binding (IEA)

monooxygenase activity (IEA)

peptidyl-lysine 3-dioxygenase activity (IEA)

protein binding (ISO)

tRNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Jmjd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	87,287,976 - 87,295,162 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	5,136,043 - 5,143,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	5,136,014 - 5,143,191 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JMJD7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	41,828,092 - 41,837,581 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	41,828,092 - 41,837,581 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	42,120,290 - 42,129,779 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	42,120,283 - 42,129,785 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	18,887,926 - 18,897,428 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	18,968,672 - 18,978,173 (+)	NCBI		HuRef
CHM1_1	15	42,238,762 - 42,248,258 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	39,634,005 - 39,643,531 (+)	NCBI		T2T-CHM13v2.0

Jmjd7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,857,964 - 119,863,085 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,857,964 - 119,863,075 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	120,027,483 - 120,032,604 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	120,027,483 - 120,032,594 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	119,853,219 - 119,858,340 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	2	121,185,249 - 121,190,127 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.09	NCBI

Jmjd7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	127,452,238 - 127,458,326 (+)	NCBI		GRCr8
mRatBN7.2	3	106,998,454 - 107,004,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,998,477 - 107,004,538 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,673,630 - 110,679,691 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	119,269,185 - 119,275,246 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,929,578 - 116,935,639 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,818,150 - 111,824,211 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,818,150 - 111,824,211 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	118,366,787 - 118,372,848 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,533,143 - 106,539,204 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	105,907,972 - 105,914,033 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Jmjd7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	8,626,926 - 8,633,153 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	8,626,931 - 8,635,337 (+)	NCBI	ChiLan1.0	ChiLan1.0

JMJD7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	8,859,308 - 8,865,805 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	8,859,257 - 8,876,395 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	8,918,493 - 8,924,937 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	8,994,574 - 9,001,081 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	8,994,605 - 9,001,051 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	8,915,357 - 8,921,804 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	9,019,340 - 9,025,781 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	9,154,327 - 9,160,776 (+)	NCBI		UU_Cfam_GSD_1.0

JMJD7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	129,525,572 - 129,533,305 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	129,525,369 - 129,533,286 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	144,548,419 - 144,556,400 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JMJD7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	41,148,280 - 41,158,744 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	99,844,252 - 99,853,977 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jmjd7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	9,010,819 - 9,016,959 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	9,010,813 - 9,016,959 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005316446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026822 ⟹ ENSSTOP00000022227

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936471	5,136,043 - 5,143,191 (+)	Ensembl

RefSeq Acc Id:

XM_005316446 ⟹ XP_005316503

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	87,287,976 - 87,295,162 (+)	NCBI
SpeTri2.0	NW_004936471	5,136,021 - 5,143,191 (+)	NCBI

Sequence:

show sequence

GAGAGCTGAGGAGTGGGGGGCGGGGCTTCGGGCGGCGGGCGTCATGGCGGCGGCGGCTTTGGAC
GCTTTGCAAAGGGCGTTACGAGAGTTCCCGGCCGCGGCACGGGAGCTCAGTGTGCCTCTTGATG
TGCCTTACCTGGATGAGCCCCCTACTCCACTCCACTTCTATCGGGACTGGGTGTGCCCCAACAG
GCCATGCATTATTCGAAATGCCCTGAAGCACTGGTCAGCTCTCCAGAAGTGGTCCCTCCCCTAC
TTAAGAGCCACAGTGGGTTCCACAGAGGTGAGTGTGGCTGTGACTCCAGATGGTTATGCAGATG
CAGTGCGAGGGGACCGATTTGTAATGCCTGCTGAGCGCCGCCTGCCCCTCAGCTATGTACTGGA
TGTTCTGGAGGGCCAGGCCCAACACCCAGGAGTCCTCTATGTGCAGAAGCAGTGTTCCAACCTG
CCCACTGAGCTGCCCCAACTGCTGTCTGATCTGGAGCCTCATGTACCCTGGGCCTCTGAGGCAC
TGGGAAAGATGCCTGATGCTGTGAACTTCTGGCTGGGGGAGGCAGCTGCAGTGACATCCTTGCA
CAAGGACCACTATGAGAACCTGTACTGTGTGGTCTCAGGGGAGAAACACTTTCTGTTACATCCA
CCCAGTGACCGGCCCTTCATCCCTTACGAACTGTACACACCTGCAACCTACCAACTAACTGAAG
AGGGTACCTTTAAGATAGTGGATGAAGAAGCCATGGAGAAGGTGCCCTGGATCCCACTGGACCC
ACTGGCTCCAGACTTGACCCAGTACCCCTGTTACAGTCAGGCACAGGCCCTTCGCTGTACTGTG
CGGGCTGGTGAACTGCTCTACCTGCCATCTCTATGGTTCCACCATGTCCAGCAGTCCCATGGCT
GCATTGCTGTGAACTTCTGGTATGACATGGAATATGACCTCAAGTACAGTTATTTCCAGCTGCT
CGACTCCCTAACTAAGGCTGCAGTCCTTGACTGATGTACCACTGGTGAATACTGCTAAGGACAT
CTTGAGGGAAAGGTTGAGCCCCTCCTAGGCTGCTGGCTTAATTCTAGAGACCACCTGGAGTTTA
AGTACTTGTCTGCTGCTCAGGGTCCAGCTTAATTTGGAATCAGCCTTGGATGATCTTGGGATAT
GATCTTGGGATGTGATTAGGAGATGCCAGGCAGGTTTGAGTGAGCGTGCCCAGGAAGTTGCCAC
ACAGGTGAGGAGGAGTGGGGATCAGGTCCTACAGCACCTTTTACCAGTGTTGAGACTCTGGGCA
AGTCACCACCTGTTGGCATTGGTGTCCTGGCTATAAACTGGAGATAATAATGGTTCTACCACAC
AGGGATGGAGATGATATCTGTAAGGTCCAGCATGGACCAGCACAAAGGAAGTGGTCAATAAAAG
GTAGCCGTGAGGGGCTGGGGATGTGGCTCAAGTGGTAGCGTGCTCGCCTGGCACGTGTGTGGCC
CA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005316503	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022227.1
GenBank Protein	KAG3261665	(Get FASTA)	NCBI Sequence Viewer
	KAG3261666	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005316503 ⟸ XM_005316446

- UniProtKB:

I3NCY0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAALDALQRALREFPAAARELSVPLDVPYLDEPPTPLHFYRDWVCPNRPCIIRNALKHWSAL
QKWSLPYLRATVGSTEVSVAVTPDGYADAVRGDRFVMPAERRLPLSYVLDVLEGQAQHPGVLYV
QKQCSNLPTELPQLLSDLEPHVPWASEALGKMPDAVNFWLGEAAAVTSLHKDHYENLYCVVSGE
KHFLLHPPSDRPFIPYELYTPATYQLTEEGTFKIVDEEAMEKVPWIPLDPLAPDLTQYPCYSQA
QALRCTVRAGELLYLPSLWFHHVQQSHGCIAVNFWYDMEYDLKYSYFQLLDSLTKAAVLD

hide sequence

RefSeq Acc Id:

ENSSTOP00000022227 ⟸ ENSSTOT00000026822

Protein Domains

JmjC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027236	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026822.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.10	UniProtKB/TrEMBL
InterPro	Cupin_8	UniProtKB/TrEMBL
	JmjC_dom	UniProtKB/TrEMBL
	RmlC-like_jellyroll	UniProtKB/TrEMBL
NCBI Gene	Jmjd7	ENTREZGENE
PANTHER	BIFUNCTIONAL PEPTIDASE AND (3S)-LYSYL HYDROXYLASE JMJD7-RELATED	UniProtKB/TrEMBL
	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	UniProtKB/TrEMBL
Pfam	Cupin_8	UniProtKB/TrEMBL
PROSITE	JMJC	UniProtKB/TrEMBL
SMART	JmjC	UniProtKB/TrEMBL
Superfamily-SCOP	Clavaminate synthase-like	UniProtKB/TrEMBL
UniProt	I3NCY0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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