Slc38a1 (solute carrier family 38 member 1) - Rat Genome Database

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Gene: Slc38a1 (solute carrier family 38 member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc38a1
Name: solute carrier family 38 member 1
RGD ID: 12520199
Description: ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid:sodium symporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN amino acid import (ortholog); female pregnancy (ortholog); glutamine metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); visual epilepsy (ortholog); FOUND IN external side of apical plasma membrane (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-coupled neutral amino acid transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,660,514 - 68,726,003 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,444,684 - 4,487,165 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,438,827 - 4,504,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc38a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,660,514 - 68,726,003 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,444,684 - 4,487,165 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,438,827 - 4,504,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,183,063 - 46,269,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,183,063 - 46,270,017 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,576,846 - 46,662,826 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,863,105 - 44,949,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 341244,867,850 - 44,948,816NCBI
Celera1245,374,176 - 45,460,544 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1243,608,096 - 43,694,464 (-)NCBIHuRef
CHM1_11246,541,943 - 46,628,310 (-)NCBICHM1_1
T2T-CHM13v2.01246,142,659 - 46,228,603 (-)NCBIT2T-CHM13v2.0
Slc38a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,469,299 - 96,541,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,469,299 - 96,540,794 (-)EnsemblGRCm39 Ensembl
GRCm381596,571,418 - 96,643,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,571,418 - 96,642,913 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,401,849 - 96,473,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,402,709 - 96,452,131 (-)NCBIMGSCv36mm8
Celera1598,716,978 - 98,788,897 (-)NCBICelera
Cytogenetic Map15F1NCBI
Slc38a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,612,414 - 129,681,727 (-)NCBIGRCr8
mRatBN7.27127,733,230 - 127,802,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,738,226 - 127,802,218 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,539,154 - 129,603,112 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,764,672 - 131,828,633 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,682,822 - 131,746,754 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07137,970,555 - 138,040,098 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,975,549 - 138,039,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,598,311 - 137,667,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,252,257 - 135,316,256 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,328,704 - 135,392,693 (-)NCBI
Celera7124,242,806 - 124,306,590 (-)NCBICelera
Cytogenetic Map7q35NCBI
Slc38a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,398,358 - 5,462,042 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,393,211 - 5,468,827 (-)NCBIChiLan1.0ChiLan1.0
SLC38A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,895,936 - 47,984,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,895,548 - 47,981,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,464,360 - 42,550,324 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,333,087 - 43,419,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,362,597 - 43,413,616 (+)Ensemblpanpan1.1panPan2
SLC38A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,110,327 - 8,179,394 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,130,823 - 8,174,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,127,750 - 38,197,361 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,309,904 - 8,379,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,309,945 - 8,379,526 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,117,874 - 8,187,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,156,867 - 8,221,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,367,553 - 38,436,859 (-)NCBIUU_Cfam_GSD_1.0
SLC38A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,009,862 - 77,058,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,009,840 - 77,076,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2579,935,364 - 80,001,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,415,986 - 42,502,794 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,421,910 - 42,472,838 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,924,850 - 204,006,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,989,601 - 6,025,987 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,988,625 - 6,025,987 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021726110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000016305   ⟹   ENSSTOP00000014598
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365124,444,684 - 4,487,165 (-)Ensembl
RefSeq Acc Id: XM_021726110   ⟹   XP_021581785
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494568,660,514 - 68,726,003 (+)NCBI
SpeTri2.0NW_0049365124,438,827 - 4,504,416 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021581785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014598.3
Reference Protein Sequences
RefSeq Acc Id: XP_021581785   ⟸   XM_021726110
- UniProtKB: I3MRA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014598   ⟸   ENSSTOT00000016305
Protein Domains
Amino acid transporter transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016301 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016305.3 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
NCBI Gene Slc38a1 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 1 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt I3MRA8 ENTREZGENE, UniProtKB/TrEMBL