Hivep3 (HIVEP zinc finger 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hivep3 (HIVEP zinc finger 3) Ictidomys tridecemlineatus
Analyze
Symbol: Hivep3
Name: HIVEP zinc finger 3
RGD ID: 12511818
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: human immunodeficiency virus type I enhancer binding protein 3; transcription factor HIVEP3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505857,261,033 - 57,717,424 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647423,085,813 - 23,238,305 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647423,089,285 - 23,238,297 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hivep3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505857,261,033 - 57,717,424 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647423,085,813 - 23,238,305 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647423,089,285 - 23,238,297 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38141,506,365 - 42,035,934 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl141,506,365 - 42,035,925 (-)EnsemblGRCh38hg38GRCh38
GRCh37141,972,036 - 42,501,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36141,748,271 - 42,156,782 (-)NCBINCBI36Build 36hg18NCBI36
Build 34141,644,777 - 42,053,254NCBI
Celera140,258,938 - 40,666,781 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef140,090,213 - 40,503,585 (-)NCBIHuRef
CHM1_1142,088,411 - 42,618,665 (-)NCBICHM1_1
T2T-CHM13v2.0141,376,570 - 41,906,502 (-)NCBIT2T-CHM13v2.0
Hivep3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,590,982 - 119,992,608 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,590,981 - 119,995,242 (+)EnsemblGRCm39 Ensembl
GRCm384119,733,759 - 120,138,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,733,784 - 120,138,045 (+)EnsemblGRCm38mm10GRCm38
MGSCv374119,487,283 - 119,808,016 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364119,312,363 - 119,633,046 (+)NCBIMGSCv36mm8
Celera4118,529,038 - 118,850,782 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.51NCBI
Hivep3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,610,592 - 139,013,058 (+)NCBIGRCr8
mRatBN7.25133,325,327 - 133,727,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5133,658,052 - 133,727,795 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5136,385,707 - 136,452,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,142,141 - 138,209,213 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,162,740 - 138,229,830 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,774,501 - 139,077,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,007,642 - 139,077,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,729,974 - 142,867,726 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45140,649,145 - 140,716,509 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15140,685,342 - 140,720,568 (+)NCBI
Celera5132,216,378 - 132,283,437 (+)NCBICelera
Cytogenetic Map5q36NCBI
Hivep3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555371,255,257 - 1,339,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555371,255,284 - 1,589,514 (-)NCBIChiLan1.0ChiLan1.0
HIVEP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,776,473 - 185,306,478 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,918,551 - 184,448,492 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0140,805,355 - 41,335,290 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1142,120,734 - 42,243,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl142,120,741 - 42,203,313 (-)Ensemblpanpan1.1panPan2
HIVEP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1151,302,964 - 1,626,834 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl151,464,865 - 1,623,027 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha151,425,593 - 1,884,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0151,256,192 - 1,715,140 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl151,552,641 - 1,711,098 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1151,496,571 - 1,621,716 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0151,556,526 - 1,681,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0151,237,818 - 1,697,016 (+)NCBIUU_Cfam_GSD_1.0
HIVEP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16169,599,427 - 169,727,013 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HIVEP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,990,286 - 91,405,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2091,212,190 - 91,405,071 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603325,475,094 - 26,014,749 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hivep3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624892897,485 - 987,575 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624892898,986 - 1,365,701 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014882   ⟹   ENSSTOP00000013331
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647423,089,546 - 23,142,203 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000027948   ⟹   ENSSTOP00000019978
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647423,085,813 - 23,238,305 (-)Ensembl
RefSeq Acc Id: XM_021736030   ⟹   XP_021591705
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505857,261,033 - 57,606,113 (-)NCBI
SpeTri2.0NW_00493647423,089,285 - 23,238,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040288469   ⟹   XP_040144403
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505857,261,033 - 57,717,424 (-)NCBI
RefSeq Acc Id: XM_040288470   ⟹   XP_040144404
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505857,261,033 - 57,607,445 (-)NCBI
RefSeq Acc Id: XM_040288471   ⟹   XP_040144405
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505857,261,033 - 57,606,113 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021591705 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144403 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144404 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144405 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013331.3
  ENSSTOP00000019978.2
GenBank Protein KAG3282894 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021591705   ⟸   XM_021736030
- UniProtKB: I3N6I2 (UniProtKB/TrEMBL),   I3MNR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144403   ⟸   XM_040288469
- UniProtKB: I3N6I2 (UniProtKB/TrEMBL),   I3MNR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144404   ⟸   XM_040288470
- UniProtKB: I3N6I2 (UniProtKB/TrEMBL),   I3MNR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144405   ⟸   XM_040288471
- UniProtKB: I3N6I2 (UniProtKB/TrEMBL),   I3MNR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000019978   ⟸   ENSSTOT00000027948
RefSeq Acc Id: ENSSTOP00000013331   ⟸   ENSSTOT00000014882
Protein Domains
C2H2-type   CCHC HIVEP-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014879 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014882.3 UniProtKB/TrEMBL
  ENSSTOT00000027948.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZF_CCHC_HIVEP UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Hivep3 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR HIVEP3 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZF_CCHC_HIVEP UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3MNR2 ENTREZGENE, UniProtKB/TrEMBL
  I3N6I2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-27 Hivep3  HIVEP zinc finger 3  Hivep3  human immunodeficiency virus type I enhancer binding protein 3  Symbol and/or name change 5135510 APPROVED