Cdh3 (cadherin 3) - Rat Genome Database

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Gene: Cdh3 (cadherin 3) Ictidomys tridecemlineatus
Analyze
Symbol: Cdh3
Name: cadherin 3
RGD ID: 12505690
Description: ENCODES a protein that exhibits cadherin binding (inferred); calcium ion binding (inferred); INVOLVED IN cell-cell adhesion (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); positive regulation of insulin-like growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); congenital hypotrichosis with juvenile macular dystrophy (ortholog); ectodermal dysplasia, ectrodactyly, and macular dystrophy syndrome (ortholog); FOUND IN adherens junction (inferred); catenin complex (inferred); cell junction (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,634,712 - 40,682,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,906,493 - 18,955,072 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,634,712 - 40,682,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,906,493 - 18,955,072 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,645,310 - 68,733,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,636,189 - 68,727,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371668,679,213 - 68,734,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,236,277 - 67,290,443 (+)NCBINCBI36Build 36hg18NCBI36
Build 341667,236,276 - 67,290,442NCBI
Celera1653,187,169 - 53,242,286 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,551,120 - 54,605,916 (+)NCBIHuRef
CHM1_11670,086,362 - 70,141,056 (+)NCBICHM1_1
T2T-CHM13v2.01674,441,601 - 74,531,453 (+)NCBIT2T-CHM13v2.0
Cdh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,237,484 - 107,283,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,237,523 - 107,283,929 (+)EnsemblGRCm39 Ensembl
GRCm388106,510,852 - 106,556,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,034,791 - 109,080,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,400,020 - 109,446,037 (+)NCBIMGSCv36mm8
Celera8110,734,945 - 110,781,298 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.16NCBI
Cdh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,303,414 - 51,353,900 (+)NCBIGRCr8
mRatBN7.21934,393,596 - 34,444,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,393,727 - 34,444,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,209,266 - 41,259,606 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,862,587 - 41,912,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,161,722 - 44,212,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,668,957 - 38,719,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,669,230 - 38,719,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,536,859 - 49,587,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,343,823 - 36,393,819 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11936,395,654 - 36,397,989 (+)NCBI
Celera1933,820,490 - 33,870,862 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cdh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBIChiLan1.0ChiLan1.0
CDH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,185,107 - 78,242,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,096,426 - 84,153,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,408,078 - 68,465,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensemblpanpan1.1panPan2
CDH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,864,859 - 80,912,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,863,661 - 80,913,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,855,712 - 80,903,039 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,300,176 - 81,347,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,300,808 - 81,348,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,126,956 - 81,174,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,810,235 - 80,857,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,450,703 - 81,498,265 (-)NCBIUU_Cfam_GSD_1.0
CDH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,191,664 - 18,235,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,190,971 - 18,236,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,844,456 - 16,853,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,717,600 - 58,775,033 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,717,597 - 58,775,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604721,455,596 - 21,513,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,616,940 - 17,658,548 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,616,296 - 17,659,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021721690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000006051   ⟹   ENSSTOP00000005414
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,908,297 - 18,953,663 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000038885   ⟹   ENSSTOP00000029947
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,906,493 - 18,955,072 (+)Ensembl
RefSeq Acc Id: XM_021721690   ⟹   XP_021577365
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934940,634,712 - 40,682,648 (-)NCBI
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021577365 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005414.3
  ENSSTOP00000029947.1
GenBank Protein KAG3256971 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021577365   ⟸   XM_021721690
- UniProtKB: A0A287D8Q4 (UniProtKB/TrEMBL),   I3M769 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000029947   ⟸   ENSSTOT00000038885
RefSeq Acc Id: ENSSTOP00000005414   ⟸   ENSSTOT00000006051
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006045 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006051.3 UniProtKB/TrEMBL
  ENSSTOT00000038885.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
NCBI Gene Cdh3 ENTREZGENE
PANTHER CADHERIN-3 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A287D8Q4 ENTREZGENE, UniProtKB/TrEMBL
  I3M769 ENTREZGENE, UniProtKB/TrEMBL