Onecut1 (one cut homeobox 1) - Rat Genome Database

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Gene: Onecut1 (one cut homeobox 1) Ictidomys tridecemlineatus
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Symbol: Onecut1
Name: one cut homeobox 1
RGD ID: 125045786
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN anatomical structure morphogenesis (inferred); B cell differentiation (inferred); cell fate commitment (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hepatocyte nuclear factor 6
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,677,620 - 96,718,396 (-)NCBIHiC_Itri_2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Onecut1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,677,620 - 96,718,396 (-)NCBIHiC_Itri_2
ONECUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,755,053 - 52,790,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1552,755,053 - 52,791,078 (-)EnsemblGRCh38hg38GRCh38
GRCh371553,047,250 - 53,082,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,836,645 - 50,869,501 (-)NCBINCBI36Build 36hg18NCBI36
Build 341550,836,644 - 50,869,501NCBI
Celera1529,944,311 - 29,977,184 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1529,879,668 - 29,912,665 (-)NCBIHuRef
CHM1_11553,167,071 - 53,200,155 (-)NCBICHM1_1
T2T-CHM13v2.01550,563,333 - 50,598,640 (-)NCBIT2T-CHM13v2.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021726831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021726831   ⟹   XP_021582506
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864096,677,620 - 96,718,396 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021582506 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021930.1
Reference Protein Sequences
RefSeq Acc Id: XP_021582506   ⟸   XM_021726831
- UniProtKB: I3NC33 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
CUT   Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028083 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025128.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CUT_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Onecut1 ENTREZGENE
PANTHER HEPATOCYTE NUCLEAR FACTOR 6 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR ONECUT UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PROSITE CUT UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt I3NC33 ENTREZGENE, UniProtKB/TrEMBL