Flacc1 (flagellum associated containing coiled-coil domains 1) - Rat Genome Database

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Gene: Flacc1 (flagellum associated containing coiled-coil domains 1) Ictidomys tridecemlineatus
Analyze
Symbol: Flacc1
Name: flagellum associated containing coiled-coil domains 1
RGD ID: 12503437
Description: ASSOCIATED WITH anthracosis (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); FOUND IN cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ALS2 chromosome region 12; Als2cr12; amyotrophic lateral sclerosis 2 chromosome region 12; amyotrophic lateral sclerosis 2 chromosome region candidate 12; flagellum-associated coiled-coil domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,629,874 - 158,661,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726600,420 - 625,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936726600,213 - 631,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Flacc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,629,874 - 158,661,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726600,420 - 625,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936726600,213 - 631,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLACC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382201,288,271 - 201,364,289 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2201,288,271 - 201,357,398 (-)EnsemblGRCh38hg38GRCh38
GRCh372202,152,994 - 202,222,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,861,230 - 201,924,421 (-)NCBINCBI36Build 36hg18NCBI36
Build 342201,978,499 - 202,041,682NCBI
Celera2195,904,962 - 195,973,949 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2194,001,532 - 194,070,517 (-)NCBIHuRef
CHM1_12202,159,167 - 202,228,121 (-)NCBICHM1_1
T2T-CHM13v2.02201,768,929 - 201,844,975 (-)NCBIT2T-CHM13v2.0
Flacc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,696,085 - 58,735,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,686,062 - 58,735,148 (-)EnsemblGRCm39 Ensembl
GRCm38158,656,926 - 58,696,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,646,903 - 58,695,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,714,961 - 58,752,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,602,667 - 58,640,503 (-)NCBIMGSCv36mm8
Celera159,177,077 - 59,214,991 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.15NCBI
Flacc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,809,731 - 67,837,793 (-)NCBIGRCr8
mRatBN7.2960,315,581 - 60,343,692 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl960,315,582 - 60,343,648 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,811,213 - 68,839,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,927,173 - 73,955,357 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0972,245,430 - 72,273,623 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,665,663 - 65,693,822 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,665,664 - 65,693,822 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0965,472,507 - 65,500,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4957,441,360 - 57,469,795 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1957,588,342 - 57,616,777 (-)NCBI
Celera957,756,584 - 57,784,074 (-)NCBICelera
Cytogenetic Map9q31NCBI
Flacc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403264,980 - 321,484 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955403264,969 - 321,370 (+)NCBIChiLan1.0ChiLan1.0
FLACC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,908,781 - 103,987,516 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,923,780 - 103,995,587 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B88,541,496 - 88,618,269 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B206,697,119 - 206,766,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,697,119 - 206,766,071 (-)Ensemblpanpan1.1panPan2
FLACC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,404,512 - 10,438,102 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,404,744 - 10,430,950 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3711,288,310 - 11,321,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03710,309,120 - 10,342,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3710,309,338 - 10,342,912 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13710,289,940 - 10,320,708 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03710,268,927 - 10,302,564 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03710,262,253 - 10,296,036 (-)NCBIUU_Cfam_GSD_1.0
FLACC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,942,349 - 104,985,722 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,950,504 - 104,986,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215116,343,375 - 116,378,479 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLACC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,945,622 - 87,009,252 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,946,674 - 87,007,579 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040112,406,707 - 112,477,556 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flacc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624899389,719 - 416,603 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624899361,645 - 416,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006304   ⟹   ENSSTOP00000005637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936726600,420 - 625,853 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038394   ⟹   ENSSTOP00000027712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936726601,143 - 625,853 (-)Ensembl
RefSeq Acc Id: XM_005338929   ⟹   XP_005338986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303158,629,874 - 158,661,225 (-)NCBI
SpeTri2.0NW_004936726600,213 - 631,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294700   ⟹   XP_040150634
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303158,629,874 - 158,661,225 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338986 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005637.3
  ENSSTOP00000027712.1
GenBank Protein KAG3274979 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338986   ⟸   XM_005338929
- Peptide Label: isoform X1
- UniProtKB: I3M7N1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150634   ⟸   XM_040294700
- Peptide Label: isoform X2
- UniProtKB: I3M7N1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000005637   ⟸   ENSSTOT00000006304
RefSeq Acc Id: ENSSTOP00000027712   ⟸   ENSSTOT00000038394


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006296 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006304.3 UniProtKB/TrEMBL
  ENSSTOT00000038394.1 UniProtKB/TrEMBL
InterPro FLACC1 UniProtKB/TrEMBL
NCBI Gene Als2cr12 ENTREZGENE
PANTHER FLAGELLUM-ASSOCIATED COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21707 UniProtKB/TrEMBL
UniProt A0A287D2F9_ICTTR UniProtKB/TrEMBL
  I3M7N1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-05 Flacc1  flagellum associated containing coiled-coil domains 1  Als2cr12  ALS2 chromosome region 12  Symbol and/or name change 5135510 APPROVED
2019-01-29 Als2cr12  ALS2 chromosome region 12    amyotrophic lateral sclerosis 2 chromosome region 12  Symbol and/or name change 5135510 APPROVED
2017-02-01 Als2cr12  amyotrophic lateral sclerosis 2 chromosome region 12    amyotrophic lateral sclerosis 2 chromosome region candidate 12  Symbol and/or name change 5135510 APPROVED