Svop (SV2 related protein) - Rat Genome Database

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Gene: Svop (SV2 related protein) Ictidomys tridecemlineatus
Analyze
Symbol: Svop
Name: SV2 related protein
RGD ID: 12493001
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN transmembrane transport (inferred); FOUND IN synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101963963; SV2 related protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,629,452 - 144,711,574 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769765,719 - 846,379 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936769764,320 - 846,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Svop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,629,452 - 144,711,574 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769765,719 - 846,379 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936769764,320 - 846,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812108,907,741 - 109,021,068 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12108,907,741 - 109,021,068 (-)EnsemblGRCh38hg38GRCh38
GRCh3712109,301,517 - 109,458,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,828,787 - 107,856,860 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412107,807,127 - 107,835,197NCBI
Celera12108,973,131 - 109,082,778 (-)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,369,094 - 106,436,914 (-)NCBIHuRef
CHM1_112109,272,304 - 109,340,104 (-)NCBICHM1_1
T2T-CHM13v2.012108,882,524 - 108,995,882 (-)NCBIT2T-CHM13v2.0
Svop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,164,974 - 114,229,441 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,164,971 - 114,229,631 (-)EnsemblGRCm39 Ensembl
GRCm385114,026,913 - 114,091,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,026,910 - 114,091,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,476,922 - 114,541,389 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,287,912 - 114,352,379 (-)NCBIMGSCv36mm8
Celera5111,128,474 - 111,193,006 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.94NCBI
Svop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,191,549 - 48,251,185 (+)NCBIGRCr8
mRatBN7.21242,530,991 - 42,589,381 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,531,032 - 42,590,572 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,698,274 - 43,755,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,311,865 - 44,369,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,372,380 - 43,429,646 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,292,272 - 48,351,974 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,292,273 - 48,351,084 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,074,383 - 50,132,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,566,784 - 43,624,986 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,430,148 - 43,488,374 (+)NCBI
Celera1244,135,621 - 44,193,944 (+)NCBICelera
Cytogenetic Map12q16NCBI
Svop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,131,846 - 10,215,725 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,131,846 - 10,215,296 (-)NCBIChiLan1.0ChiLan1.0
SVOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210116,975,286 - 117,086,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112116,971,684 - 117,082,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,486,060 - 106,596,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112109,878,044 - 109,990,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,878,044 - 109,990,827 (-)Ensemblpanpan1.1panPan2
SVOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,963,412 - 18,034,343 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,963,706 - 18,032,682 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,767,842 - 17,838,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,307,568 - 18,377,952 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,307,561 - 18,378,686 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12617,977,385 - 18,047,619 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,298,271 - 18,368,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,316,793 - 18,387,599 (+)NCBIUU_Cfam_GSD_1.0
SVOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,845,205 - 41,928,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11441,829,649 - 41,931,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,371,243 - 44,468,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SVOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,113,489 - 104,220,821 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11104,110,374 - 104,220,624 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037140,879,763 - 140,986,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Svop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474712,119,443 - 12,199,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474712,119,699 - 12,199,908 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025300   ⟹   ENSSTOP00000021409
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936769765,719 - 846,379 (-)Ensembl
RefSeq Acc Id: XM_040290934   ⟹   XP_040146868
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118144,629,452 - 144,711,574 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040146868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021409.2
GenBank Protein KAG3278865 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040146868   ⟸   XM_040290934
- UniProtKB: I3NAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000021409   ⟸   ENSSTOT00000025300
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025881 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025300.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  SVOP-like_MFS_dom UniProtKB/TrEMBL
NCBI Gene Svop ENTREZGENE
PANTHER 3-(3-HYDROXY-PHENYL)PROPIONATE TRANSPORTER-RELATED UniProtKB/TrEMBL
  SYNAPTIC VESICLE GLYCOPROTEIN 2 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
  Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3NAL2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Svop  SV2 related protein  LOC101963963  SV2 related protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101963963  SV2 related protein  Svop  SV2 related protein  Symbol and/or name change 5135510 APPROVED