Atraid (all-trans retinoic acid induced differentiation factor) - Rat Genome Database

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Gene: Atraid (all-trans retinoic acid induced differentiation factor) Ictidomys tridecemlineatus
Analyze
Symbol: Atraid
Name: all-trans retinoic acid induced differentiation factor
RGD ID: 12492105
Description: ENCODES a protein that exhibits xenobiotic transmembrane transporter activity (inferred); INVOLVED IN negative regulation of osteoblast proliferation (inferred); negative regulation of protein catabolic process (inferred); positive regulation of bone mineralization (inferred); ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); lysosomal membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: all-trans retinoic acid induced differentiation factor, transcript variant X1; all-trans retinoic acid induced differentiation factor, transcript variant X2; all-trans retinoic acid-induced differentiation factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,501,434 - 65,506,414 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,333,169 - 5,338,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,333,151 - 5,338,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atraid
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,501,434 - 65,506,414 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,333,169 - 5,338,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,333,151 - 5,338,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATRAID
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,212,041 - 27,217,183 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,212,041 - 27,217,178 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,434,909 - 27,440,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,288,403 - 27,293,557 (+)NCBINCBI36Build 36hg18NCBI36
Celera227,281,225 - 27,286,373 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,176,604 - 27,181,752 (+)NCBIHuRef
CHM1_1227,364,803 - 27,369,951 (+)NCBICHM1_1
T2T-CHM13v2.0227,253,676 - 27,258,822 (+)NCBIT2T-CHM13v2.0
Atraid
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,205,984 - 31,211,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,205,656 - 31,211,967 (+)EnsemblGRCm39 Ensembl
GRCm38531,048,640 - 31,054,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,048,312 - 31,054,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,351,013 - 31,356,996 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,325,240 - 31,331,205 (+)NCBIMGSCv36mm8
Celera528,520,671 - 28,526,646 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.94NCBI
Atraid
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,035,194 - 31,039,779 (-)NCBIGRCr8
mRatBN7.2625,315,236 - 25,319,821 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx625,615,952 - 25,620,625 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,931,821 - 25,936,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,410,819 - 25,415,405 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,680,628 - 26,685,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,680,598 - 26,685,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,495,619 - 36,500,176 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,296,435 - 25,300,992 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,299,388 - 25,303,931 (-)NCBI
Celera624,806,112 - 24,810,669 (-)NCBICelera
Cytogenetic Map6q14NCBI
Atraid
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554699,194,656 - 9,203,292 (+)NCBIChiLan1.0ChiLan1.0
ATRAID
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,295,952 - 99,301,260 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,299,919 - 99,305,096 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,213,556 - 27,218,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,301,175 - 27,306,294 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,301,175 - 27,306,294 (+)Ensemblpanpan1.1panPan2
ATRAID
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,193,685 - 21,198,897 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,193,909 - 21,198,718 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,085,430 - 21,090,701 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,514,595 - 21,519,873 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,514,879 - 21,541,837 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,201,349 - 21,206,629 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,212,426 - 21,217,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,259,309 - 21,264,580 (+)NCBIUU_Cfam_GSD_1.0
ATRAID
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,914,708 - 111,919,946 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,914,710 - 111,919,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,912,964 - 118,918,196 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATRAID
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,399,298 - 80,404,539 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,399,513 - 80,404,280 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,750,835 - 31,755,984 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atraid
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,311,836 - 9,317,861 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,311,746 - 9,318,099 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000037856   ⟹   ENSSTOP00000025108
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364935,333,169 - 5,338,116 (-)Ensembl
RefSeq Acc Id: XM_005322540   ⟹   XP_005322597
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,501,434 - 65,506,414 (+)NCBI
SpeTri2.0NW_0049364935,333,151 - 5,338,157 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322597 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000025108.1
GenBank Protein KAG3267783 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267784 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005322597   ⟸   XM_005322540
- Sequence:
RefSeq Acc Id: ENSSTOP00000025108   ⟸   ENSSTOT00000037856
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034683 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000037856.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro ATRAID UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
NCBI Gene Atraid ENTREZGENE
PANTHER ALL-TRANS RETINOIC ACID-INDUCED DIFFERENTIATION FACTOR UniProtKB/TrEMBL
  PTHR15926 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
UniProt A0A287CV15_ICTTR UniProtKB/TrEMBL