Slc30a9 (solute carrier family 30 member 9) - Rat Genome Database

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Gene: Slc30a9 (solute carrier family 30 member 9) Ictidomys tridecemlineatus
Analyze
Symbol: Slc30a9
Name: solute carrier family 30 member 9
RGD ID: 12491423
Description: ENCODES a protein that exhibits antiporter activity (inferred); chromatin binding (inferred); monoatomic cation transmembrane transporter activity (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Birk-Landau-Perez Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); cytoskeleton (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 30 member 9, transcript variant X1; solute carrier family 30 member 9, transcript variant X2; zinc transporter 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,015,591 - 37,112,184 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,186,198 - 9,281,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,186,044 - 9,282,646 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc30a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,015,591 - 37,112,184 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,186,198 - 9,281,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,186,044 - 9,282,646 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38441,990,530 - 42,090,461 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl441,990,502 - 42,090,461 (+)EnsemblGRCh38hg38GRCh38
GRCh37441,992,547 - 42,092,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36441,687,280 - 41,784,308 (+)NCBINCBI36Build 36hg18NCBI36
Build 34441,833,450 - 41,930,478NCBI
Celera442,436,367 - 42,535,251 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,314,384 - 41,411,336 (+)NCBIHuRef
CHM1_1441,992,998 - 42,089,827 (+)NCBICHM1_1
T2T-CHM13v2.0441,964,357 - 42,064,385 (+)NCBIT2T-CHM13v2.0
Slc30a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,464,298 - 67,513,485 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,464,298 - 67,515,786 (+)EnsemblGRCm39 Ensembl
GRCm38567,306,955 - 67,356,142 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,306,955 - 67,358,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,698,196 - 67,747,384 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,586,092 - 67,635,277 (+)NCBIMGSCv36mm8
Celera564,609,485 - 64,658,412 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.02NCBI
Slc30a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,170,164 - 41,224,861 (-)NCBIGRCr8
mRatBN7.21440,816,284 - 40,870,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,816,290 - 40,870,929 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,163,614 - 41,217,044 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,463,696 - 42,517,124 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01440,944,484 - 40,997,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,464,814 - 42,519,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,465,807 - 42,520,020 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,260,670 - 42,315,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,423,677 - 43,477,106 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1439,971,799 - 40,024,874 (-)NCBICelera
Cytogenetic Map14p11NCBI
Slc30a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,642,828 - 5,716,071 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,641,372 - 5,716,188 (-)NCBIChiLan1.0ChiLan1.0
SLC30A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,172,118 - 42,271,944 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,365,508 - 42,465,365 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,315,959 - 36,412,653 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,163,547 - 42,260,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,163,724 - 42,255,318 (+)Ensemblpanpan1.1panPan2
SLC30A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,053,613 - 39,138,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,055,252 - 39,134,956 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1339,034,325 - 39,113,858 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,548,803 - 39,628,746 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,545,614 - 39,617,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,238,687 - 39,317,575 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,349,922 - 39,429,370 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01339,815,084 - 39,894,643 (+)NCBIUU_Cfam_GSD_1.0
SLC30A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,058,618 - 33,113,283 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,058,666 - 33,111,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2834,713,130 - 34,766,670 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,263,287 - 8,367,549 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,260,355 - 8,367,395 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,568,926 - 54,678,061 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,869,491 - 24,944,258 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,869,370 - 24,944,410 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000005381   ⟹   ENSSTOP00000004818
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364829,186,198 - 9,281,242 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000019401   ⟹   ENSSTOP00000017442
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364829,186,198 - 9,281,242 (+)Ensembl
RefSeq Acc Id: XM_005319948   ⟹   XP_005320005
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528537,015,591 - 37,112,183 (-)NCBI
SpeTri2.0NW_0049364829,186,045 - 9,282,646 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356254   ⟹   XP_013211708
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528537,015,591 - 37,112,184 (-)NCBI
SpeTri2.0NW_0049364829,186,044 - 9,282,646 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320005 (Get FASTA)   NCBI Sequence Viewer  
  XP_013211708 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004818.3
  ENSSTOP00000017442.2
GenBank Protein KAG3276702 (Get FASTA)   NCBI Sequence Viewer  
  KAG3276703 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005320005   ⟸   XM_005319948
- Peptide Label: isoform X2
- UniProtKB: I3MZ96 (UniProtKB/TrEMBL),   I3M5Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013211708   ⟸   XM_013356254
- Peptide Label: isoform X1
- UniProtKB: I3M5Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004818   ⟸   ENSSTOT00000005381
RefSeq Acc Id: ENSSTOP00000017442   ⟸   ENSSTOT00000019401


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005375 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005381.3 UniProtKB/TrEMBL
  ENSSTOT00000019401.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
  3.90.530.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
  DNA-bd_dom_put_sf UniProtKB/TrEMBL
  SLC30A9 UniProtKB/TrEMBL
  XPA_sf UniProtKB/TrEMBL
NCBI Gene Slc30a9 ENTREZGENE
PANTHER PTHR13414 UniProtKB/TrEMBL
  ZINC TRANSPORTER 9 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF161111 UniProtKB/TrEMBL
  SSF46955 UniProtKB/TrEMBL
UniProt I3M5Z1 ENTREZGENE, UniProtKB/TrEMBL
  I3MZ96 ENTREZGENE, UniProtKB/TrEMBL